RCSB PDB: Search

Yoneyama, M., Tochio, N., Koshiba, S., Watabe, S., Harada, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

2DII	Download File View File

Solution structure of the BSD domain of human TFIIH basal transcription factor complex p62 subunit

To be published

Released	2006-09-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TFIIH basal transcription factor complex p62 subunit (protein)

2RUK	Download File View File

Solution structure of the complex between p53 transactivation domain 2 and TFIIH p62 PH domain

(2014) J Am Chem Soc 136: 14143-14152

Released	2014-10-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) General transcription factor IIH subunit 1 (protein)

2RVB	Download File View File

Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain

(2015) Structure 23: 1827-1837

Released	2015-09-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA repair protein complementing XP-C cells (protein) General transcription factor IIH subunit 1 (protein)

5GOW	Download File View File

Solution structure of the complex between DP1 acidic region and TFIIH p62 PH domain

(2016) J Mol Biol 428: 4993-5006

Released	2016-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DP1 (protein) General transcription factor IIH subunit 1 (protein)

5XV8	Download File View File

Solution structure of the complex between UVSSA acidic region and TFIIH p62 PH domain

(2017) Nucleic Acids Res 45: 13043-13055

Released	2017-11-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	General transcription factor IIH subunit 1 (protein) UV-stimulated scaffold protein A (protein)

7AD8	Download File View File

Core TFIIH-XPA-DNA complex with modelled p62 subunit

Koelmel, W., Kuper, J., Kisker, C.

(2020) Nucleic Acids Res 48: 12689-12696

Released	2021-07-28
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

7BUL	Download File View File

Solution structure of the tandem PH and BSD1 domains of TFIIH p62

(2021) Nucleic Acids Res 49: 2916-2930

Released	2020-12-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	General transcription factor IIH subunit 1 (protein)

7EGB	Download File View File

TFIID-based holo PIC on SCP promoter

Chen, X., Wu, Z., Hou, H., Qi, Y., Wang, X., Li, J., Xu, Y.

(2021) Science 372:

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 43 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7EGC	Download File View File

p53-bound TFIID-based holo PIC on HDM2 promoter

Chen, X., Wu, Z., Hou, H., Qi, Y., Wang, X., Li, J., Xu, Y.

(2021) Science 372:

Released	2021-05-12
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 43 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7ENA	Download File View File

TFIID-based PIC-Mediator holo-complex in pre-assembled state (pre-hPIC-MED)

Chen, X., Qi, Y., Wang, X., Wu, Z., Yin, X., Li, J., Liu, W., Xu, Y.

(2021) Science 372:

Released	2021-05-26
Method	ELECTRON MICROSCOPY 4.07 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 68 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7ENC	Download File View File

TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED)

Chen, X., Qi, Y., Wang, X., Wu, Z., Yin, X., Li, J., Liu, W., Xu, Y.

(2021) Science 372:

Released	2021-05-26
Method	ELECTRON MICROSCOPY 4.13 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 68 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7NVR	Download File View File

Human Mediator with RNA Polymerase II Pre-initiation complex

Rengachari, S., Schilbach, S., Aibara, S., Cramer, P.

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens Human mastadenovirus C Sus scrofa Trichoplusia ni
Macromolecule	Unique protein chains: 56 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7NVW	Download File View File

TFIIH in a pre-translocated state (without ADP-BeF3)

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Human mastadenovirus C
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

7NVX	Download File View File

TFIIH in a post-translocated state (with ADP-BeF3)

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Human mastadenovirus C
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG, SF4, ZN

7NVY	Download File View File

RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 7.3 Å
Organisms	Homo sapiens Human mastadenovirus C Sus scrofa
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7NVZ	Download File View File

RNA polymerase II pre-initiation complex with closed promoter DNA in distal position

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Homo sapiens Human mastadenovirus C Sus scrofa
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

7NW0	Download File View File

RNA polymerase II pre-initiation complex with open promoter DNA

(2021) Nature 594: 124-128

Released	2021-05-05
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Homo sapiens Human mastadenovirus C Sus scrofa
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, MG, SF4, ZN

8BVW	Download File View File

RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)

Abril-Garrido, J., Dienemann, C., Grabbe, F., Velychko, T., Lidschreiber, M., Wang, H., Cramer, P.

(2023) Mol Cell 83: 1798

Released	2023-05-03
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Sus scrofa Xenopus laevis unidentified adenovirus
Macromolecule	Unique protein chains: 36 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

8BYQ	Download File View File

RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)

Abril-Garrido, J., Dienemann, C., Grabbe, F., Velychko, T., Lidschreiber, M., Wang, H., Cramer, P.

(2023) Mol Cell 83: 1798

Released	2023-05-03
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens Sus scrofa Xenopus laevis unidentified adenovirus
Macromolecule	Unique protein chains: 34 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

8EBS	Download File View File

Initial DNA-lesion (Cy5) binding by XPC and TFIIH

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBT	Download File View File

XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (Cy5)

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBU	Download File View File

XPC release from Core7-XPA-DNA (Cy5)

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

8EBV	Download File View File

Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 7.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBW	Download File View File

Initial DNA-lesion (AP) binding by XPC and TFIIH complex2

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 5.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBX	Download File View File

XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (AP)