RCSB PDB: Search

2B7T \| pdb_00002b7t	Download File View File

Structure of ADAR2 dsRBM1

Stefl, R., Xu, M., Skrisovska, L., Emeson, R.B., Allain, F.H.-T.

(2006) Structure 14: 345-355

Released	2006-03-14
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Double-stranded RNA-specific editase 1 (protein)

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2B7V \| pdb_00002b7v	Download File View File

Structure of ADAR2 dsRBM2

Stefl, R., Xu, M., Skrisovska, L., Emeson, R.B., Allain, F.H.-T.

(2006) Structure 14: 345-355

Released	2006-03-14
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Double-stranded RNA-specific editase 1 (protein)

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2L2K \| pdb_00002l2k	Download File View File

Solution NMR structure of the R/G STEM LOOP RNA-ADAR2 DSRBM2 Complex

Allain, F.H.-T., Oberstrass, F.C., Stefl, R.

(2010) Cell 143: 225-237

Released	2010-10-27
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	Adenosine deaminase (protein) RNA (42-MER) (nucleic acid)

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2L3C \| pdb_00002l3c	Download File View File

Solution structure of ADAR2 dsRBM1 bound to LSL RNA

Allain, F., Stefl, R., Oberstrass, F.

(2010) Cell 143: 225-237

Released	2010-10-27
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (34-MER) (nucleic acid)

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2L3J \| pdb_00002l3j	Download File View File

The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific read out of the minor groove

Stefl, R., Oberstrass, F.C., Allain, F.H.-T.

(2010) Cell 143: 225-237

Released	2010-10-27
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (71-MER) (nucleic acid)

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5ED1 \| pdb_00005ed1	Download File View File

Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from S. cerevisiae BDF2 gene

Matthews, M.M., Fisher, A.J., Beal, P.A.

(2016) Nat Struct Mol Biol 23: 426-433

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5'-R(GPAPCPUPGPAPAPCPGPAPCPCPAPAPUPGPUPGPGPGPGPAPA)-3') (nucleic acid) RNA (5'-R(UPUPCPCPCPCPAPCPAPUPUP(8AZ)PGPAPCPGPUPUPCPAPGPUPC)-3') (nucleic acid)
Unique Ligands	IHP, ZN

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5ED2 \| pdb_00005ed2	Download File View File

Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

Matthews, M.M., Fisher, A.J.

(2016) Nat Struct Mol Biol 23: 426-433

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5'-R(PCPAPGPAPGPCPCPCPCPCPCPAPGPCPAPUPCPGPCPGPAPGPC)-3') (nucleic acid) RNA (5'-R(PGPCPUPCPGPCPGPAPUPGPCPUP(8AZ)PGPAPGPGPGPCPUPCPUPG)-3') (nucleic acid)
Unique Ligands	IHP, ZN

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5HP2 \| pdb_00005hp2	Download File View File

Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AU basepair at reaction site

Matthews, M.M., Fisher, A.J., Beal, P.A.

(2016) Nat Struct Mol Biol 23: 426-433

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.983 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5'-R(GPAPCPUPGPAPAPCPGPAPCPUPAPAPUPGPUPGPGPGPGPAPA)-3') (nucleic acid) RNA (5'-R(UPUPCPCPCPCPAPCPAPUPUP(8AZ)PGPAPCPGPUPUPCPAPGPUPC)-3') (nucleic acid)
Unique Ligands	IHP, ZN

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5HP3 \| pdb_00005hp3	Download File View File

Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AC mismatch at reaction site

Matthews, M.M., Fisher, A.J., Beal, P.A.

(2016) Nat Struct Mol Biol 23: 426-433

Released	2016-04-13
Method	X-RAY DIFFRACTION 3.091 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5'-R(GPAPCPUPGPAPAPCPGPAPCPCPAPAPUPGPUPGPGPGPGPAPA)-3') (nucleic acid) RNA (5'-R(UPUPCPCPCPCPAPCPAPUPUP(8AZ)PGPAPCPGPUPUPCPAPGPUPC)-3') (nucleic acid)
Unique Ligands	IHP, ZN

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6D06 \| pdb_00006d06	Download File View File

Human ADAR2d E488Y mutant complexed with dsRNA containing an abasic site opposite the edited base

Matthews, M.M., Fisher, A.J., Beal, P.A.

(2019) Cell Chem Biol 26: 269

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5'-R(CPAPGPAPGPCPCPCPCPCPNPAPGPCPAPUPCPGPCPGPAPGPC)-3') (nucleic acid) RNA (5'-R(GPCPUPCPGPCPGPAPUPGPCPUP(8AZ)PGPAPGPGPGPCPUPCPUPG)-3') (nucleic acid)
Unique Ligands	IHP, ZN

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6VFF \| pdb_00006vff	Download File View File

Dimer of Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

Thuy-boun, A.S., Fisher, A.J., Beal, P.A.

(2020) Nucleic Acids Res 48: 7958-7972

Released	2020-07-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5-R(GPCPUPCPGPCPGPAPUPGPCPUP(8AZ)PGPAPGPGPGPCP UPCPUPGPAPUPAPGPCPUPAPCPG)-3) (nucleic acid) RNA(5-R(CPGPUPAPGPCPUPAPUPCPAPGPAPGPCPCPCPCPCPCPAPGPCPAPUPCPGPCPGPAPGPC)-3) (nucleic acid)
Unique Ligands	IHP, ZN

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7KFN \| pdb_00007kfn	Download File View File

Structure of Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA containing a 2'-deoxy Benner's Base Z opposite the edited base

Wilcox, X.E., Fisher, A.J., Beal, P.A.

(2021) J Am Chem Soc 143: 6865-6876

Released	2021-06-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific editase 1 (protein) Gli1 1W5 23mer RNA (nucleic acid) Gli1 8AZ 23mer RNA (nucleic acid)
Unique Ligands	IHP, ZN

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7Q72 \| pdb_00007q72	Download File View File

Structure of Pla1 in complex with Red1

Soni, K., Wild, K., Sinning, I.

(2023) Nat Commun 14: 772-772

Released	2022-12-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	NURS complex subunit red1 (protein) Poly(A) polymerase pla1 (protein)

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7QUU \| pdb_00007quu	Download File View File

Red1-Iss10 complex

Mackereth, C.D., Kadlec, J., Laroussi, H.

(2022) Nat Commun 13: 4969-4969

Released	2022-09-07
Method	SOLUTION NMR
Organisms	Schizosaccharomyces pombe
Macromolecule	NURS complex subunit red1 (protein) Uncharacterized protein C7D4.14c (protein)

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8E0F \| pdb_00008e0f	Download File View File

Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing a G-G pair adjacent to the target site

Wilcox, X.E., Fisher, A.J., Beal, P.A.

(2022) Nucleic Acids Res 50: 10857-10868

Released	2022-10-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5-R(GPCPUPCPGPCPGPAPUPGPCPGP(8AZ)PGPAPGPGPGPCP UPCPUPGPAPUPAPGPCPUPAPCPG)-3) (nucleic acid) RNA(5-R(CPGPUPAPGPCPUPAPUPCPAPGPAPGPCPCPCPCPCPCPGPGPCPAPUPCPGPCPGPAPGPC)-3) (nucleic acid)
Unique Ligands	IHP, ZN

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8E4X \| pdb_00008e4x	Download File View File

Human Adenosine Deaminase Acting on dsRNA (ADAR2-R2D) bound to dsRNA containing a G:3-deaza dA pair adjacent to the target site

Fisher, A.J., Mendoza, H.G.

(2022) Nucleic Acids Res 50: 10857-10868

Released	2022-10-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5-R(GPCPUPCPGPCPGPAPUPGPCPGP(8AZ)PGPAPGPGPGPCP UPCPUPGPAPUPAPGPCPUPAPCPG)-3) (nucleic acid) RNA(5-R(CPGPUPAPGPCPUPAPUPCPAPGPAPGPCPCPCPCPCPCP(4DU)GPCPAPUPCPGPCPGPAPGPC)-3) (nucleic acid)
Unique Ligands	IHP, ZN

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9D5J \| pdb_00009d5j	Download File View File

Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing deoxyinosine at the -1 position of the guide strand

Fisher, A.J., Cheng, J., Manjunath, A., Campbell, K.

(2024) Biomolecules 14:

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Isoform 4 of Double-stranded RNA-specific editase 1 (protein) RNA Top Strand Containing 8-azanebularine (8AZ) (nucleic acid) RNA Bottom Strand containing deoxyinosine complementary to a guanosine adjacent to the target site (hybrid)
Unique Ligands	EDO, IHP, ZN

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9D5K \| pdb_00009d5k	Download File View File

Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing an expanded cytidine analog at the -1 position of the guide strand

Fisher, A.J., Cheng, J., Manjunath, A., Campbell, K.

(2024) Biomolecules 14:

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.697 Å
Organisms	Homo sapiens
Macromolecule	Isoform 4 of Double-stranded RNA-specific editase 1 (protein) RNA Top Strand (nucleic acid) RNA Bottom Strand (hybrid)
Unique Ligands	IHP, MG, ZN

2B7T | pdb_00002b7t

Structure of ADAR2 dsRBM1

2B7V | pdb_00002b7v

Structure of ADAR2 dsRBM2

2L2K | pdb_00002l2k

Solution NMR structure of the R/G STEM LOOP RNA-ADAR2 DSRBM2 Complex

2L3C | pdb_00002l3c

Solution structure of ADAR2 dsRBM1 bound to LSL RNA

2L3J | pdb_00002l3j

The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific read out of the minor groove

5ED1 | pdb_00005ed1

Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from S. cerevisiae BDF2 gene

5ED2 | pdb_00005ed2

Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

5HP2 | pdb_00005hp2

Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AU basepair at reaction site

5HP3 | pdb_00005hp3

Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AC mismatch at reaction site

6D06 | pdb_00006d06

Human ADAR2d E488Y mutant complexed with dsRNA containing an abasic site opposite the edited base

6VFF | pdb_00006vff

Dimer of Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

7KFN | pdb_00007kfn

Structure of Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA containing a 2'-deoxy Benner's Base Z opposite the edited base

7Q72 | pdb_00007q72

Structure of Pla1 in complex with Red1

7QUU | pdb_00007quu

Red1-Iss10 complex

8E0F | pdb_00008e0f

Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing a G-G pair adjacent to the target site

8E4X | pdb_00008e4x

Human Adenosine Deaminase Acting on dsRNA (ADAR2-R2D) bound to dsRNA containing a G:3-deaza dA pair adjacent to the target site

9D5J | pdb_00009d5j

Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing deoxyinosine at the -1 position of the guide strand

9D5K | pdb_00009d5k

Human Adenosine Deaminase Acting on dsRNA (ADAR2-RD) bound to dsRNA containing an expanded cytidine analog at the -1 position of the guide strand

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2B7T | pdb_00002b7t

2B7V | pdb_00002b7v

2L2K | pdb_00002l2k

2L3C | pdb_00002l3c

2L3J | pdb_00002l3j

5ED1 | pdb_00005ed1

5ED2 | pdb_00005ed2

5HP2 | pdb_00005hp2

5HP3 | pdb_00005hp3

6D06 | pdb_00006d06

6VFF | pdb_00006vff

7KFN | pdb_00007kfn

7Q72 | pdb_00007q72

7QUU | pdb_00007quu

8E0F | pdb_00008e0f

8E4X | pdb_00008e4x

9D5J | pdb_00009d5j

9D5K | pdb_00009d5k