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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "ARNTL"

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Homo sapiens (6)
	Mus musculus (5)
	synthetic construct (2)

Taxonomy

	Eukaryota (8)
	other sequences (2)

Experimental Method

	ELECTRON MICROSCOPY (4)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

	Protein (8)
	DNA (5)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	3.5 - 4.0 (2)
	> 4.5 (2)

Release Date

	2010 - 2014 (2)
	2020 - 2024 (3)
	2025 - 2029 (3)

Enzyme Classification Name

Transferases (5)

Symmetry Type

Asymmetric (8)

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1 to 8 of 8 Structures

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4F3L \| pdb_00004f3l	Download File View File

Crystal Structure of the Heterodimeric CLOCK:BMAL1 Transcriptional Activator Complex

Huang, N., Chelliah, Y., Shan, Y., Taylor, C., Yoo, S., Partch, C., Green, C.B., Zhang, H., Takahashi, J.

(2012) Science 337: 189-194

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.268 Å
Organisms	Mus musculus
Macromolecule	BMAL1b (protein) Circadian locomoter output cycles protein kaput (protein)

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4H10 \| pdb_00004h10	Download File View File

Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic Helix-Loop-Helix domains with E-box DNA

Wang, Z., Su, X.-D.

(2013) Cell Res 23: 213-224

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.402 Å
Organisms	Homo sapiens
Macromolecule	Aryl hydrocarbon receptor nuclear translocator-like protein 1 (protein) Circadian locomoter output cycles protein kaput (protein) E-box DNA antisense strand (nucleic acid) E-box DNA sense strand (nucleic acid)

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8OSJ \| pdb_00008osj	Download File View File

Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)

Michael, A.K., Stoos, L., Kempf, G., Cavadini, S., Thoma, N.H.

(2023) Nature 619: 385-393

Released	2023-05-24
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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8OSK \| pdb_00008osk	Download File View File

Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)

Stoos, L., Michael, A.K., Kempf, G., Cavadini, S., Thoma, N.H.

(2023) Nature 619: 385-393

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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8OSL \| pdb_00008osl	Download File View File

Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)

Michael, A.K., Stoos, L., Kempf, G., Cavadini, S., Thoma, N.

(2023) Nature 619: 385-393

Released	2023-05-24
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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8RW6 \| pdb_00008rw6	Download File View File

Human Brain and muscle ARNT-like 1 (BMAL1_HUMAN) PAS-B domain

Pu, H., Rastinejad, F.

(2025) Nat Chem Biol

Released	2025-02-05
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Basic helix-loop-helix ARNT-like protein 1 (protein)

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8RW8 \| pdb_00008rw8	Download File View File

Brain and muscle ARNT-like 1 (BMAL1) PAS-B domain in-complex with core circadian modulator (CCM)

Pu, H., Rastinejad, F.

(2025) Nat Chem Biol

Released	2025-02-05
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Homo sapiens
Macromolecule	Basic helix-loop-helix ARNT-like protein 1 (protein)
Unique Ligands	A1H3P, A1H3Q

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8VHG \| pdb_00008vhg	Download File View File

Structure of the BMAL1/HIF2A heterodimer in Complex with DNA

Li, T., Tsai, K.L.

To be published

Released	2025-02-12
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Mus musculus
Macromolecule	Basic helix-loop-helix ARNT-like protein 1 (protein) Endothelial PAS domain-containing protein 1 (protein) Forward strand DNA containing HRE motif (nucleic acid) Reverse strand DNA containing HRE motif (nucleic acid)

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4F3L | pdb_00004f3l

Crystal Structure of the Heterodimeric CLOCK:BMAL1 Transcriptional Activator Complex

4H10 | pdb_00004h10

Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic Helix-Loop-Helix domains with E-box DNA

8OSJ | pdb_00008osj

Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)

8OSK | pdb_00008osk

Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)

8OSL | pdb_00008osl

Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)

8RW6 | pdb_00008rw6

Human Brain and muscle ARNT-like 1 (BMAL1_HUMAN) PAS-B domain

8RW8 | pdb_00008rw8

Brain and muscle ARNT-like 1 (BMAL1) PAS-B domain in-complex with core circadian modulator (CCM)

8VHG | pdb_00008vhg

Structure of the BMAL1/HIF2A heterodimer in Complex with DNA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

4F3L | pdb_00004f3l

4H10 | pdb_00004h10

8OSJ | pdb_00008osj

8OSK | pdb_00008osk

8OSL | pdb_00008osl

8RW6 | pdb_00008rw6

8RW8 | pdb_00008rw8

8VHG | pdb_00008vhg