RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "AP1S3"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (19)
	Mus musculus (19)
	Human immunodeficiency virus 1 (17)

Taxonomy

	Eukaryota (19)
	Riboviria (17)

Experimental Method

	ELECTRON MICROSCOPY (18)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (15)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (5)
	2020 - 2024 (13)

Enzyme Classification Name

Hydrolases (17)

Membrane Protein Annotation

mpstruc (12)

Symmetry Type

	Cyclic (10)
	Asymmetric (9)

AllSelected

1 to 19 of 19 Structures

Page 1 of 1

Sort by

Explore in 3D

4HMY \| pdb_00004hmy	Download File View File

Structural basis for recruitment and activation of the AP-1 clathrin adaptor complex by Arf1

Ren, X., Farias, G.G., Canagarajah, B.J., Bonifacino, J.S., Hurley, J.H.

(2013) Cell 152: 755-767

Released	2013-03-06
Method	X-RAY DIFFRACTION 7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ADP-ribosylation factor 1 (protein) AP-1 complex subunit beta-1 (protein) AP-1 complex subunit gamma-1 (protein) AP-1 complex subunit mu-1 (protein) AP-1 complex subunit sigma-3 (protein)
Unique Ligands	GTP, MG

Explore in 3D

6CM9 \| pdb_00006cm9	Download File View File

Structure of the cargo bound AP-1:Arf1:tetherin-Nef closed trimer monomeric subunit

Morris, K.L., Buffalo, C.Z., Ren, X., Hurley, J.H.

(2018) Cell 174: 659-671.e14

Released	2018-08-08
Method	ELECTRON MICROSCOPY 3.73 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

Explore in 3D

6CRI \| pdb_00006cri	Download File View File

Structure of the cargo bound AP-1:Arf1:tetherin-Nef stable closed trimer

Morris, K.L., Buffalo, C.Z., Hurley, J.H.

(2018) Cell 174: 659-671.e14

Released	2018-08-01
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

Explore in 3D

6D83 \| pdb_00006d83	Download File View File

Structure of the cargo bound AP-1:Arf1:tetherin-Nef (L164A, L165A) dileucine mutant dimer monomeric subunit

Buffalo, C.Z., Morris, K.L., Hurley, J.H.

(2018) Cell 174: 659-671.e14

Released	2018-08-08
Method	ELECTRON MICROSCOPY 4.27 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

Explore in 3D

6D84 \| pdb_00006d84	Download File View File

Structure of the cargo bound AP-1:Arf1:tetherin-Nef (L164A, L165A) dileucine mutant dimer

Buffalo, C.Z., Morris, K.L., Hurley, J.H.

(2018) Cell 174: 659-671.e14

Released	2018-08-08
Method	ELECTRON MICROSCOPY 6.72 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

Explore in 3D

6DFF \| pdb_00006dff	Download File View File

Structure of the cargo bound AP-1:Arf1:tetherin-Nef monomer

Morris, K.L., Buffalo, C.Z., Ren, X., Hurley, J.H.

(2018) Cell 174: 659-671.e14

Released	2018-08-08
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

Explore in 3D

7R4H \| pdb_00007r4h	Download File View File

phospho-STING binding to adaptor protein complex-1

Xu, P., Ablasser, A.

(2022) Nature 610: 761-767

Released	2022-09-14
Method	ELECTRON MICROSCOPY 2.34 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

Explore in 3D

7UX3 \| pdb_00007ux3	Download File View File

Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2023-05-10
Method	ELECTRON MICROSCOPY 9.6 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D4C \| pdb_00008d4c	Download File View File

beta-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated narrow membrane tubes

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2023-06-14
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D4D \| pdb_00008d4d	Download File View File

gamma-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated narrow membrane tubes

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2023-06-14
Method	ELECTRON MICROSCOPY 9.6 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D4E \| pdb_00008d4e	Download File View File

Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2023-06-14
Method	ELECTRON MICROSCOPY 9.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D4F \| pdb_00008d4f	Download File View File

beta-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2023-06-14
Method	ELECTRON MICROSCOPY 9.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D4G \| pdb_00008d4g	Download File View File

gamma-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2023-06-14
Method	ELECTRON MICROSCOPY 11.6 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D9R \| pdb_00008d9r	Download File View File

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide membrane tubes, centered on gamma-Arf1

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2022-11-09
Method	ELECTRON MICROSCOPY 20 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D9S \| pdb_00008d9s	Download File View File

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide membrane tubes, centered on beta-Arf1

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2022-11-09
Method	ELECTRON MICROSCOPY 20 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D9T \| pdb_00008d9t	Download File View File

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on gamma-Arf1

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2022-11-09
Method	ELECTRON MICROSCOPY 20 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D9U \| pdb_00008d9u	Download File View File

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on beta-Arf1

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2022-11-09
Method	ELECTRON MICROSCOPY 20 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D9V \| pdb_00008d9v	Download File View File

gamma-Arf1 homodimeric interface within AP-1, Arf1, Nef lattice on narrow membrane tubes

Hooy, R.M., Hurley, J.H.

(2022) Sci Adv 8: eadd3914-eadd3914

Released	2022-11-09
Method	ELECTRON MICROSCOPY 9.4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

Explore in 3D

8D9W \| pdb_00008d9w	Download File View File

beta-Arf1 homodimeric interface within AP-1, Arf1, Nef, MHC-I lattice on narrow tubes

Hooy, R.H., Hurley, J.H.

(2022) Sci Adv 8: eadd3914

Released	2023-07-05
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 7
Unique Ligands	GTP, MG

1 to 19 of 19 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4HMY | pdb_00004hmy

Structural basis for recruitment and activation of the AP-1 clathrin adaptor complex by Arf1

6CM9 | pdb_00006cm9

Structure of the cargo bound AP-1:Arf1:tetherin-Nef closed trimer monomeric subunit

6CRI | pdb_00006cri

Structure of the cargo bound AP-1:Arf1:tetherin-Nef stable closed trimer

6D83 | pdb_00006d83

Structure of the cargo bound AP-1:Arf1:tetherin-Nef (L164A, L165A) dileucine mutant dimer monomeric subunit

6D84 | pdb_00006d84

Structure of the cargo bound AP-1:Arf1:tetherin-Nef (L164A, L165A) dileucine mutant dimer

6DFF | pdb_00006dff

Structure of the cargo bound AP-1:Arf1:tetherin-Nef monomer

7R4H | pdb_00007r4h

phospho-STING binding to adaptor protein complex-1

7UX3 | pdb_00007ux3

Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes

8D4C | pdb_00008d4c

beta-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated narrow membrane tubes

8D4D | pdb_00008d4d

gamma-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated narrow membrane tubes

8D4E | pdb_00008d4e

Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes

8D4F | pdb_00008d4f

beta-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes

8D4G | pdb_00008d4g

gamma-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated wide(r) membrane tubes

8D9R | pdb_00008d9r

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide membrane tubes, centered on gamma-Arf1

8D9S | pdb_00008d9s

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide membrane tubes, centered on beta-Arf1

8D9T | pdb_00008d9t

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on gamma-Arf1

8D9U | pdb_00008d9u

AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes, centered on beta-Arf1

8D9V | pdb_00008d9v

gamma-Arf1 homodimeric interface within AP-1, Arf1, Nef lattice on narrow membrane tubes

8D9W | pdb_00008d9w

beta-Arf1 homodimeric interface within AP-1, Arf1, Nef, MHC-I lattice on narrow tubes

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

4HMY | pdb_00004hmy

6CM9 | pdb_00006cm9

6CRI | pdb_00006cri

6D83 | pdb_00006d83

6D84 | pdb_00006d84

6DFF | pdb_00006dff

7R4H | pdb_00007r4h

7UX3 | pdb_00007ux3

8D4C | pdb_00008d4c

8D4D | pdb_00008d4d

8D4E | pdb_00008d4e

8D4F | pdb_00008d4f

8D4G | pdb_00008d4g

8D9R | pdb_00008d9r

8D9S | pdb_00008d9s

8D9T | pdb_00008d9t

8D9U | pdb_00008d9u

8D9V | pdb_00008d9v

8D9W | pdb_00008d9w