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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Homo sapiens (5)
	Bifidobacterium longum (4)
	Moniliophthora perniciosa (4)
	Ciona intestinalis (2)
	Mus musculus (2)
	Escherichia coli K-12 (1)
	Lambdavirus lambda (1)
	Lumbricus terrestris (1)
	Mayaro virus (1)
	Xanthomonas citri pv. citri str. 306 (1)

Taxonomy

	Eukaryota (14)
	Bacteria (6)
	Duplodnaviria (1)
	Riboviria (1)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

	Protein (21)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (3)
	2.5 - 3.0 (6)
	3.0 - 3.5 (4)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (6)
	2020 - 2024 (10)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (1)

Symmetry Type

	Cyclic (7)
	Asymmetric (7)
	Dihedral (7)
	Icosahedral (1)

AllSelected

1 to 21 of 21 Structures

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3SUJ	Download File View File

Crystal structure of cerato-platanin 1 from M. perniciosa (MpCP1)

Oliveira, J.F., Barsottini, M.R.O., Zaparoli, G., Machado, L.O., Dias, S.M.G., Pereira, G.A.G., Ambrosio, A.L.B.

(2013) Mol Plant Microbe Interact 26: 1281-1293

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Moniliophthora perniciosa
Macromolecule	Cerato-platanin 1 (protein)
Unique Ligands	ACT, CL, NA, ZN

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3SUK	Download File View File

Crystal structure of cerato-platanin 2 from M. perniciosa (MpCP2)

Oliveira, J.F., Barsottini, M.R.O., Zaparoli, G., Machado, L.O., Dias, S.M.G., Pereira, G.A.G., Ambrosio, A.L.B.

(2013) Mol Plant Microbe Interact 26: 1281-1293

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Moniliophthora perniciosa
Macromolecule	Cerato-platanin-like protein (protein)

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3SUL	Download File View File

Crystal structure of cerato-platanin 3 from M. perniciosa (MpCP3)

Oliveira, J.F., Barsottini, M.R.O., Zaparoli, G., Machado, L.O., Dias, S.M.G., Pereira, G.A.G., Ambrosio, A.L.B.

(2013) Mol Plant Microbe Interact 26: 1281-1293

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Moniliophthora perniciosa
Macromolecule	Cerato-platanin-like protein (protein)

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3SUM	Download File View File

Crystal structure of cerato-platanin 5 from M. perniciosa (MpCP5)

Oliveira, J.F., Barsottini, M.R.O., Zaparoli, G., Machado, L.O., Dias, S.M.G., Pereira, G.A.G., Ambrosio, A.L.B.

(2013) Mol Plant Microbe Interact 26: 1281-1293

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Moniliophthora perniciosa
Macromolecule	Cerato-platanin-like protein (protein)

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4JKT	Download File View File

Crystal structure of mouse Glutaminase C, BPTES-bound form

Fornezari, C., Ferreira, A.P.S., Dias, S.M.G., Ambrosio, A.L.B.

(2013) J Biol Chem 288: 28009-28020

Released	2013-08-14
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Mus musculus
Macromolecule	Glutaminase kidney isoform, mitochondrial (protein)
Unique Ligands	04A

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5M3L	Download File View File

Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris hemoglobin

Afanasyev, P., Linnemayr-Seer, C., Ravelli, R.B.G., Matadeen, R., De Carlo, S., Alewijnse, B., Portugal, R.V., Pannu, N.S., Schatz, M., van Heel, M.

(2017) IUCrJ 4: 678-694

Released	2017-09-13
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Lumbricus terrestris
Macromolecule	Unique protein chains: 7
Unique Ligands	HEM

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5U0I	Download File View File

C-terminal ankyrin repeats from human kidney-type glutaminase (KGA) - tetragonal crystal form

Pasquali, C.C., Gonzalez, A., Dias, S.M.G., Ambrosio, A.L.B.

(2017) J Biol Chem 292: 11572-11585

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.423 Å
Organisms	Homo sapiens
Macromolecule	Glutaminase kidney isoform, mitochondrial (protein)
Unique Ligands	CL, NA

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5U0J	Download File View File

C-terminal ankyrin repeats from human kidney-type glutaminase (KGA) - monoclinic crystal form

Pasquali, C.C., Gonzalez, A., Dias, S.M.G., Ambrosio, A.L.B.

(2017) J Biol Chem 292: 11572-11585

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	Glutaminase kidney isoform, mitochondrial (protein)
Unique Ligands	NA

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5U0K	Download File View File

C-terminal ankyrin repeats from human liver-type glutaminase (GAB/LGA)

Ferreira, I.M., Pasquali, C.C., Gonzalez, A., Dias, S.M.G., Ambrosio, A.L.B.

(2017) J Biol Chem 292: 11572-11585

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.548 Å
Organisms	Homo sapiens
Macromolecule	Glutaminase liver isoform, mitochondrial (protein)

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5UQE	Download File View File

Multidomain structure of human kidney-type glutaminase(KGA/GLS)

Pasquali, C.C., Dias, S.M.G., Ambrosio, A.L.B.

(2017) J Biol Chem 292: 11572-11585

Released	2017-05-24
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens
Macromolecule	Glutaminase kidney isoform, mitochondrial (protein)
Unique Ligands	04A

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6GYB	Download File View File

Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri

Sgro, G.G., Costa, T.R.D., Farah, C.S., Waksman, G.

(2018) Nat Microbiol 3: 1429-1440

Released	2018-10-24
Method	ELECTRON MICROSCOPY 3.28 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	VirB10 protein (protein) VirB7 (protein) VirB9 protein (protein)

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6N4C	Download File View File

EM structure of the DNA wrapping in bacterial open transcription initiation complex

Florez-Ariza, A., Cassago, A., de Oliveira, P.S.L., Guerra, D.G., Portugal, R.V.

(2020) bioRxiv

Released	2020-05-27
Method	ELECTRON MICROSCOPY 17 Å
Organisms	Escherichia coli K-12 Lambdavirus lambda
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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7KO8	Download File View File

Cryo-EM structure of the mature and infective Mayaro virus

Riberio-Filho, H.V., Coimbra, L.D., Cassago, A., Rocha, R.P.F., Padilha, A.C.M., Schatz, M., van Heel, M.G., Portugal, R.V., Trivella, D.B.B., de Oliveira, P.S.L., Marques, R.E.

(2021) Nat Commun 12: 3038-3038

Released	2021-04-28
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Mayaro virus
Macromolecule	Capsid protein (protein) E1 glycoprotein (protein) E2 glycoprotein (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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7M6J	Download File View File

Human Septin Hexameric Complex SEPT2G/SEPT6/SEPT7 by Single Particle Cryo-EM

Mendonca, D.C., Pereira, H.M., van Heel, M., Portugal, R.V., Garratt, R.C.

(2021) J Mol Biol 433: 167096-167096

Released	2021-07-07
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Septin-2 (protein) Septin-6 (protein) Septin-7 (protein)
Unique Ligands	GDP, GTP, MG

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7UFR	Download File View File

Cryo-EM Structure of Bl_Man38A at 2.7 A

Santos, C.R., Cordeiro, R.L., Domingues, M.N., Borges, A.C., de Farias, M.A., Van Heel, M., Murakami, M.T., Portugal, R.V.

(2022) Nat Chem Biol

Released	2022-11-16
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Bifidobacterium longum
Macromolecule	Alpha-mannosidase (protein)
Unique Ligands	ZN

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7UFS	Download File View File

Cryo-EM Structure of Bl_Man38B at 3.4 A

Santos, C.R., Cordeiro, R.L., Domingues, M.N., Borges, A.C., de Farias, M.A., Van Heel, M., Murakami, M.T., Portugal, R.V.

(2022) Nat Chem Biol

Released	2022-11-16
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Bifidobacterium longum
Macromolecule	Alpha-mannosidase (protein)
Unique Ligands	ZN

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7UFT	Download File View File

Cryo-EM Structure of Bl_Man38C at 2.9 A

Santos, C.R., Cordeiro, R.L., Domingues, M.N., Borges, A.C., de Farias, M.A., Van Heel, M., Murakami, M.T., Portugal, R.V.

(2022) Nat Chem Biol

Released	2022-11-16
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Bifidobacterium longum
Macromolecule	Alpha-mannosidase (protein)
Unique Ligands	ZN

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7UFU	Download File View File

Cryo-EM Structure of Bl_Man38A nucleophile mutant in complex with mannose at 2.7 A

Santos, C.R., Cordeiro, R.L., Domingues, M.N., Borges, A.C., de Farias, M.A., Van Heel, M., Murakami, M.T., Portugal, R.V.

(2022) Nat Chem Biol

Released	2022-11-16
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Bifidobacterium longum
Macromolecule	Alpha-mannosidase (protein)
Unique Ligands	MAN, ZN

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8EC6	Download File View File

Cryo-EM structure of the Glutaminase C core filament (fGAC)

Ambrosio, A.L., Dias, S.M., Quesnay, J.E., Portugal, R.V., Cassago, A., van Heel, M.G., Islam, Z., Rodrigues, C.T.

(2023) Nat Struct Mol Biol 30: 1902-1912

Released	2023-09-20
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Mus musculus
Macromolecule	Isoform 2 of Glutaminase kidney isoform, mitochondrial (protein)
Unique Ligands	PO4

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9BHT	Download File View File

Septin Hexameric Complex SEPT2/SEPT6/SEPT7 of Ciona intestinalis by Cryo-EM

Mendonca, D.C., Pereira, H.M., Garratt, R.C.

(2024) J Mol Biol 436: 168693-168693

Released	2024-07-10
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Ciona intestinalis
Macromolecule	CiSeptin-2 (protein) CiSeptin-6 (protein) CiSeptin-7 (protein)
Unique Ligands	GDP, GTP

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9BHW	Download File View File

Septin Tetrameric Complex SEPT7/SEPT9 of Ciona intestinalis by Cryo-EM

Mendonca, D.C., Pereira, H.M., Garratt, R.C.

(2024) J Mol Biol 436: 168693-168693

Released	2024-07-10
Method	ELECTRON MICROSCOPY 2.72 Å
Organisms	Ciona intestinalis
Macromolecule	CiSeptin-7 (protein) Neuronal-specific septin-3 (protein)
Unique Ligands	GDP

1 to 21 of 21 Structures

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