RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = HYP

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 414 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (414)

Scientific Name of Source Organism

	Homo sapiens (115)
	Amanita phalloides (54)
	synthetic construct (45)
	Chlamydomonas reinhardtii (16)
	Conus geographus (16)
	Arabidopsis thaliana (11)
	Mus musculus (9)
	Saimiriine herpesvirus 2 (9)
	chemical production metagenome (9)
	Conus marmoreus (8)

More...

Taxonomy

	Eukaryota (279)
	other sequences (45)
	Eukaryota (eukaryotes) (23)
	Duplodnaviria (9)
	unclassified sequences (9)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (255)
	SOLUTION NMR (81)
	ELECTRON MICROSCOPY (74)
	FIBER DIFFRACTION (4)

Polymer Entity Type

Protein (414)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (71)
	1.5 - 2.0 (94)
	2.0 - 2.5 (49)
	2.5 - 3.0 (36)
	3.0 - 3.5 (32)
	3.5 - 4.0 (28)
	> 4.5 (16)

Release Date

	1990 - 1994 (6)
	1995 - 1999 (14)
	2000 - 2004 (43)
	2005 - 2009 (57)
	2010 - 2014 (37)
	2015 - 2019 (108)
	2020 - 2024 (140)
	2025 - 2029 (9)

Enzyme Classification Name

	Hydrolases (37)
	Lyases (19)
	Oxidoreductases (1)
	Transferases (1)

Membrane Protein Annotation

OPM (11)

Symmetry Type

	Asymmetric (316)
	Helical (77)
	Cyclic (23)
	Dihedral (21)

SCOP Classification

	Alpha and beta proteins (a+b) (18)
	Alpha and beta proteins (a/b) (18)
	Artifacts (9)
	Designed proteins (15)
	Peptides (26)
	Small proteins (12)
	Low resolution protein structures (2)
	All beta proteins (1)

AllSelected

1 to 25 of 414 Polymer Entities

Page 1 of 17

Sort by

Explore in 3D

1AG7: Entity 1	Download File View File

CONOTOXIN GS, NMR, 20 STRUCTURES

Hill, J.M., Alewood, P.F., Craik, D.J.

(1997) Structure 5: 571-583

Released	1998-04-08
Method	SOLUTION NMR
Chain ID	A
Organism	Conus geographus
Macromolecule	CONOTOXIN GS

Explore in 3D

1AS5: Entity 1	Download File View File

SOLUTION STRUCTURE OF CONOTOXIN Y-PIIIE FROM CONUS PURPURASCENS, NMR, 14 STRUCTURES

Mitchell, S.S., Shon, K., Foster, M.P., Olivera, B.M., Ireland, C.M.

(1998) Biochemistry 37: 1215-1220

Released	1998-10-14
Method	SOLUTION NMR
Chain ID	A
Organism	Conus purpurascens
Macromolecule	CONOTOXIN Y-PIIIE

Explore in 3D

1AV3: Entity 1	Download File View File

POTASSIUM CHANNEL BLOCKER KAPPA CONOTOXIN PVIIA FROM C. PURPURASCENS, NMR, 20 STRUCTURES

Scanlon, M.J., Naranjo, D., Thomas, L., Alewood, P.F., Lewis, R.J., Craik, D.J.

(1997) Structure 5: 1585-1597

Released	1998-10-14
Method	SOLUTION NMR
Chain ID	A
Organism	Conus purpurascens
Macromolecule	Kappa-conotoxin PVIIA

Explore in 3D

1BDK: Entity 1	Download File View File

AN NMR, CD, MOLECULAR DYNAMICS, AND FLUOROMETRIC STUDY OF THE CONFORMATION OF THE BRADYKININ ANTAGONIST B-9340 IN WATER AND IN AQUEOUS MICELLAR SOLUTIONS

Sejbal, J., Kotovych, G., Cann, J.R., Stewart, J.M., Gera, L.

(1996) J Med Chem 39: 1281-1292

Released	1995-12-07
Method	SOLUTION NMR
Chain ID	A
Macromolecule	bradykinin antagonist B-9340

Explore in 3D

1BKV: Entity 1	Download File View File

COLLAGEN

Kramer, R.Z., Bella, J., Mayville, P., Brodsky, B., Berman, H.M.

(1999) Nat Struct Biol 6: 454-457

Released	1999-02-16
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B, C
Macromolecule	T3-785

Explore in 3D

1CAG: Entity 1	Download File View File

CRYSTAL AND MOLECULAR STRUCTURE OF A COLLAGEN-LIKE PEPTIDE AT 1.9 ANGSTROM RESOLUTION

Bella, J., Eaton, M., Brodsky, B., Berman, H.M.

(1994) Science 266: 75-81

Released	1994-11-01
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B, C
Macromolecule	COLLAGEN-LIKE PEPTIDE

Explore in 3D

1CGD: Entity 1	Download File View File

HYDRATION STRUCTURE OF A COLLAGEN PEPTIDE

Bella, J., Brodsky, B., Berman, H.M.

(1995) Structure 3: 893-906

Released	1996-06-20
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B, C
Macromolecule	COLLAGEN-LIKE PEPTIDE

Explore in 3D

1D7T: Entity 1	Download File View File

NMR STRUCTURE OF AN ENGINEERED CONTRYPHAN CYCLIC PEPTIDE (MOTIF CPXXPXC)

Pallaghy, P.K., Norton, R.S.

(2000) Biopolymers 54: 173-179

Released	2000-09-13
Method	SOLUTION NMR
Chain ID	A
Organism	synthetic construct
Macromolecule	YNK-CONTRYPHAN

Explore in 3D

1DFY: Entity 1	Download File View File

NMR STRUCTURE OF CONTRYPHAN-SM CYCLIC PEPTIDE (MAJOR FORM-CIS)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2002-05-01
Method	SOLUTION NMR
Chain ID	A
Organism	Conus stercusmuscarum
Macromolecule	CONTRYPHAN-SM

Explore in 3D

1DFZ: Entity 1	Download File View File

NMR STRUCTURE OF CONTRYPHAN-SM CYCLIC PEPTIDE (MINOR FORM-TRANS)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2002-05-01
Method	SOLUTION NMR
Chain ID	A
Organism	Conus stercusmuscarum
Macromolecule	CONTRYPHAN-SM

Explore in 3D

1DG0: Entity 1	Download File View File

NMR STRUCTURE OF DES[GLY1]-CONTRYPHAN-R CYCLIC PEPTIDE (MAJOR FORM)

Pallaghy, P.K., He, W., Jimenez, E.C., Olivera, B.M., Norton, R.S.

(2000) Biochemistry 39: 12845-12852

Released	2003-09-09
Method	SOLUTION NMR
Chain ID	A
Organism	Conus radiatus
Macromolecule	DES[GLY1]-CONTRYPHAN-R

Explore in 3D

1DLZ: Entity 1	Download File View File

SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC)

Balashova, T.A., Shenkarev, Z.O., Tagaev, A.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.

(2000) FEBS Lett 466: 333

Released	2000-02-03
Method	SOLUTION NMR
Chain ID	A
Organism	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB

Explore in 3D

1DZI: Entity 2	Download File View File

integrin alpha2 I domain / collagen complex

Emsley, j., Knight, G., Farndale, R., Barnes, M., Liddington, R.

(2000) Cell 101: 47

Released	2001-03-01
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	B, C, D
Organism	synthetic construct
Macromolecule	COLLAGEN

Explore in 3D

1EI8: Entity 1	Download File View File

STRUCTURAL CONSEQUENCES OF A DISCONTINUITY IN THE REPEATING TRIPEPTIDE SEQUENCE OF A COLLAGEN-LIKE TRIPLE-HELICAL PEPTIDE

Berman, H.M., Liu, J.

(2006) J Mol Biology 362: 298-311

Released	2003-09-09
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B, C, D, E
Organism	Drosophila melanogaster
Macromolecule	COLLAGEN-LIKE PEPTIDE (PRO-HYP-GLY)4-PG-(PRO-HYP-GLY)5

Explore in 3D

1EYO: Entity 1	Download File View File

SOLUTION STRUCTURE OF CONOTOXIN TVIIA FROM CONUS TULIPA

Hill, J.M., Alewood, P.F., Craik, D.J.

(2000) Eur J Biochem 267: 4649-4657

Released	2000-09-06
Method	SOLUTION NMR
Chain ID	A
Organism	Conus tulipa
Macromolecule	CONOTOXIN TVIIA

Explore in 3D

1G1P: Entity 1	Download File View File

NMR Solution Structures of delta-Conotoxin EVIA from Conus ermineus that Selectively Acts on Vertebrate Neuronal Na+ Channels

Volpon, L., Lamthanh, H., Barbier, J., Gilles, N., Molgo, J., Menez, A., Lancelin, J.M.

(2004) J Biological Chem 279: 21356-21366

Released	2000-11-01
Method	SOLUTION NMR
Chain ID	A
Organism	Conus ermineus
Macromolecule	CONOTOXIN EVIA

Explore in 3D

1G1Z: Entity 1	Download File View File

NMR Solution Structures of delta-Conotoxin EVIA from Conus ermineus that Selectively Acts on Vertebrate Neuronal Na+ Channels, LEU12-PRO13 Cis isomer

Volpon, L., Lamthanh, H., Le Gall, F., Menez, A., Lancelin, J.M.

(2004) J Biological Chem 279: 21356-21366

Released	2000-11-01
Method	SOLUTION NMR
Chain ID	A
Organism	Conus ermineus
Macromolecule	CONOTOXIN EVIA

Explore in 3D

1GIB: Entity 1	Download File View File

MU-CONOTOXIN GIIIB, NMR

Hill, J.M., Alewood, P.F., Craik, D.J.

(1996) Biochemistry 35: 8824-8835

Released	1996-11-08
Method	SOLUTION NMR
Chain ID	A
Organism	Conus geographus
Macromolecule	MU-CONOTOXIN GIIIB

Explore in 3D

1GK8: Entity 1	Download File View File

Rubisco from Chlamydomonas reinhardtii

Taylor, T.C.

(2001) J Biological Chem 276: 48159

Released	2001-10-24
Method	X-RAY DIFFRACTION 1.4 Å
Chain IDs	A, B [auth C], C [auth E], D [auth G]
Organism	Chlamydomonas reinhardtii
Macromolecule	RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN

Explore in 3D

1GQ0: Entity 1	Download File View File

Solution structure of Antiamoebin I, a membrane channel-forming polypeptide; NMR, 20 structures

Galbraith, T.P., Harris, R., Driscoll, P.C., Wallace, B.A.

(2003) Biophys J 84: 185-194

Released	2003-01-24
Method	SOLUTION NMR
Chain ID	A
Organism	Emericellopsis sp. 2723
Macromolecule	ANTIAMOEBIN I

Explore in 3D

1IEO: Entity 1	Download File View File

SOLUTION STRUCTURE OF MRIB-NH2

Sharpe, I.A., Gehrmann, J., Loughnan, M.L., Thomas, L., Adams, D.A., Atkins, A., Palant, E., Craik, D.J., Adams, D.J., Alewood, P.F., Lewis, R.J.

(2001) Nat Neurosci 4: 902-907

Released	2002-04-03
Method	SOLUTION NMR
Chain ID	A
Organism	Conus marmoreus
Macromolecule	PROTEIN MRIB-NH2

Explore in 3D

1IH9: Entity 1	Download File View File

NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles

Shenkarev, Z.O., Balasheva, T.A., Efremov, R.G., Yakimenko, Z.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.

(2002) Biophys J 82: 762

Released	2002-02-13
Method	SOLUTION NMR
Chain ID	A
Organism	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB

Explore in 3D

1IR2: Entity 1	Download File View File

Crystal Structure of Activated Ribulose-1,5-bisphosphate Carboxylase/oxygenase (Rubisco) from Green alga, Chlamydomonas reinhardtii Complexed with 2-Carboxyarabinitol-1,5-bisphosphate (2-CABP)

Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.

(2002) J Mol Biology 316: 679-691

Released	2002-03-20
Method	X-RAY DIFFRACTION 1.84 Å
Chain IDs	A, C [auth B], G [auth D], I [auth E], O [auth H] More (16)
Organism	Chlamydomonas reinhardtii
Macromolecule	Large subunit of Rubisco