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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 64 Structures.

Refinements

Structure Determination Methodology

experimental (64)

Scientific Name of Source Organism

	Homo sapiens (14)
	Shewanella frigidimarina (11)
	Chelativorans sp. BNC1 (3)
	Chloroflexus aurantiacus (3)
	Gallus gallus (3)
	Escherichia coli (2)
	Homo sapiens neanderthalensis (2)
	Leishmania major strain Friedlin (2)
	Mus musculus (2)
	Mycobacterium tuberculosis H37Rv (2)

More...

Taxonomy

	Bacteria (38)
	Eukaryota (26)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (64)

Polymer Entity Type

Protein (64)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (17)
	2.0 - 2.5 (35)
	2.5 - 3.0 (7)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (18)
	2005 - 2009 (8)
	2010 - 2014 (9)
	2015 - 2019 (20)
	2020 - 2024 (7)

Enzyme Classification Name

	Oxidoreductases (36)
	Lyases (18)
	Transferases (3)
	Hydrolases (2)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (7)
	MemProtMD (5)
	OPM (2)
	mpstruc (1)

Symmetry Type

	Asymmetric (28)
	Dihedral (24)
	Cyclic (13)

SCOP Classification

	Alpha and beta proteins (a/b) (26)
	All alpha proteins (25)
	Alpha and beta proteins (a+b) (23)
	Artifacts (7)
	All beta proteins (6)
	Membrane and cell surface proteins and peptides (3)
	Small proteins (2)

AllSelected

1 to 25 of 64 Structures

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1D4E \| pdb_00001d4e	Download File View File

CRYSTAL STRUCTURE OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1 COMPLEXED WITH FUMARATE

Leys, D., Tsapin, A.S., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

(1999) Nat Struct Biol 6: 1113-1117

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Shewanella oneidensis
Macromolecule	FLAVOCYTOCHROME C FUMARATE REDUCTASE (protein)
Unique Ligands	FAD, FUM, HEC

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1E39 \| pdb_00001e39	Download File View File

Flavocytochrome C3 from Shewanella frigidimarina histidine 365 mutated to alanine

Doherty, M.K., Pealing, S.L., Miles, C.S., Moysey, R., Taylor, P., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2000) Biochemistry 39: 10695

Released	2000-09-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Shewanella frigidimarina
Macromolecule	FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT (protein)
Unique Ligands	FAD, FUM, GOL, HEC, NA

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1GZ3 \| pdb_00001gz3	Download File View File

Molecular mechanism for the regulation of human mitochondrial NAD(P)+-dependent malic enzyme by ATP and fumarate

Yang, Z., Lanks, C.W., Tong, L.

(2002) Structure 10: 951-960

Released	2003-05-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent malic enzyme, mitochondrial (protein)
Unique Ligands	ATP, FUM, MN, OXL

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1GZ4 \| pdb_00001gz4	Download File View File

molecular mechanism of the regulation of human mitochondrial NAD(P)+-dependent malic enzyme by ATP and fumarate

Yang, Z., Lanks, C.W., Tong, L.

(2002) Structure 10: 951

Released	2002-07-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	NAD-DEPENDENT MALIC ENZYME (protein)
Unique Ligands	ATP, FUM, MN, TTN

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1JRX \| pdb_00001jrx	Download File View File

Crystal structure of Arg402Ala mutant flavocytochrome c3 from Shewanella frigidimarina

Mowat, C.G., Moysey, R., Miles, C.S., Leys, D., Doherty, M.K., Taylor, P., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2001) Biochemistry 40: 12292-12298

Released	2001-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	FLAVOCYTOCHROME C (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1JRY \| pdb_00001jry	Download File View File

Crystal structure of Arg402Lys mutant flavocytochrome c3 from Shewanella frigidimarina

Mowat, C.G., Moysey, R., Miles, C.S., Leys, D., Doherty, M.K., Taylor, P., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2001) Biochemistry 40: 12292-12298

Released	2001-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	FLAVOCYTOCHROME C (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1JRZ \| pdb_00001jrz	Download File View File

Crystal structure of Arg402Tyr mutant flavocytochrome c3 from Shewanella frigidimarina

Mowat, C.G., Moysey, R., Miles, C.S., Leys, D., Doherty, M.K., Taylor, P., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2001) Biochemistry 40: 12292-12298

Released	2001-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	FLAVOCYTOCHROME C (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1KSS \| pdb_00001kss	Download File View File

Crystal Structure of His505Ala Mutant Flavocytochrome c3 from Shewanella frigidimarina

Pankhurst, K.L., Mowat, C.G., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2002) Biochemistry 41: 8551-8556

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1KSU \| pdb_00001ksu	Download File View File

Crystal Structure of His505Tyr Mutant Flavocytochrome c3 from Shewanella frigidimarina

Pankhurst, K.L., Mowat, C.G., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2002) Biochemistry 41: 8551-8556

Released	2002-08-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1LJ1 \| pdb_00001lj1	Download File View File

Crystal structure of Q363F/R402A mutant flavocytochrome c3

Mowat, C.G., Pankhurst, K.L., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2002) Biochemistry 41: 11990-11996

Released	2002-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c3 (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1M64 \| pdb_00001m64	Download File View File

Crystal structure of Q363F mutant flavocytochrome c3

Mowat, C.G., Pankhurst, K.L., Miles, C.S., Leys, D., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2002) Biochemistry 41: 11990-11996

Released	2002-11-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c3 (protein)
Unique Ligands	FAD, FUM, HEM, NA

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1P2E \| pdb_00001p2e	Download File View File

H61A mutant of flavocytochrome c3

Rothery, E.L., Mowat, C.G., Miles, C.S., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2003) Biochemistry 42: 13160-13169

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Shewanella frigidimarina
Macromolecule	flavocytochrome c3 (protein)
Unique Ligands	ACY, FAD, FUM, HEM, NA

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1PJ2 \| pdb_00001pj2	Download File View File

Crystal structure of human mitochondrial NAD(P)+-dependent malic enzyme in a pentary complex with natural substrate malate, cofactor NADH, Mn++, and allosteric activator fumarate

Tao, X., Yang, Z., Tong, L.

(2003) Structure 11: 1141-1150

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent malic enzyme, mitochondrial (protein)
Unique Ligands	FUM, LMR, MN, NAI

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1PJ3 \| pdb_00001pj3	Download File View File

Crystal structure of human mitochondrial NAD(P)+-dependent malic enzyme in a pentary complex with natural substrate pyruvate, cofactor NAD+, Mn++, and allosteric activator fumarate.

Tao, X., Yang, Z., Tong, L.

(2003) Structure 11: 1141-1150

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent malic enzyme, mitochondrial (protein)
Unique Ligands	FUM, MN, NAD, PYR

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1PJ4 \| pdb_00001pj4	Download File View File

Crystal structure of human mitochondrial NAD(P)+-dependent malic enzyme in a pentary complex with natural substrate malate, ATP, Mn++, and allosteric activator fumarate.

Tao, X., Yang, Z., Tong, L.

(2003) Structure 11: 1141-1150

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent malic enzyme, mitochondrial (protein)
Unique Ligands	ATP, FUM, MLT, MN

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1QCO \| pdb_00001qco	Download File View File

CRYSTAL STRUCTURE OF FUMARYLACETOACETATE HYDROLASE COMPLEXED WITH FUMARATE AND ACETOACETATE

Timm, D.E., Mueller, H.A., Bhanumoorthy, P., Harp, J.M., Bunick, G.J.

(1999) Structure 7: 1023-1033

Released	2000-06-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	FUMARYLACETOACETATE HYDROLASE (protein)
Unique Ligands	AAE, CA, FUM, NI

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1QLB \| pdb_00001qlb	Download File View File

respiratory complex II-like fumarate reductase from Wolinella succinogenes

Lancaster, C.R.D., Kroeger, A., Auer, M., Michel, H.

(1999) Nature 402: 377

Released	1999-11-29
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Wolinella succinogenes
Macromolecule	FUMARATE REDUCTASE CYTOCHROME B SUBUNIT (protein) FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT (protein) FUMARATE REDUCTASE IRON-SULFUR PROTEIN (protein)
Unique Ligands	CA, F3S, FAD, FES, FUM, HEM, LMT, SF4

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1UXG \| pdb_00001uxg	Download File View File

Large improvement in the thermal stability of a tetrameric malate dehydrogenase by single point mutations at the dimer-dimer interface.

Bjork, A., Dalhus, B., Mantzilas, D., Eijsink, V.G.H., Sirevag, R.

(2004) J Mol Biology 341: 1215

Released	2004-08-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Chloroflexus aurantiacus
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	FUM, NAD

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1UXH \| pdb_00001uxh	Download File View File

Large improvement in the thermal stability of a tetrameric malate dehydrogenase by single point mutations at the dimer-dimer interface

Bjork, A., Dalhus, B., Mantzilas, D., Eijsink, V.G.H., Sirevag, R.

(2004) J Mol Biology 341: 1215

Released	2004-08-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Chloroflexus aurantiacus
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	FUM, NAD

Explore in 3D

1UXI \| pdb_00001uxi	Download File View File

Large improvement in the thermal stability of a tetrameric malate dehydrogenase by single point mutations at the dimer-dimer interface

Bjork, A., Dalhus, B., Mantzilas, D., Eijsink, V.G.H., Sirevag, R.

(2004) J Mol Biology 341: 1215

Released	2004-08-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Chloroflexus aurantiacus
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	FUM, NA, NAD

Explore in 3D

2B7R \| pdb_00002b7r	Download File View File

Structure of E378D mutant flavocytochrome c3

Pankhurst, K.L., Mowat, C.G., Rothery, E.L., Miles, C.S., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2006) J Biological Chem 281: 20589-20597

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Shewanella frigidimarina
Macromolecule	Fumarate reductase flavoprotein subunit (protein)
Unique Ligands	FAD, FUM, HEM, NA

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2B7S \| pdb_00002b7s	Download File View File

R381K mutant of flavocytochrome c3

Pankhurst, K.L., Mowat, C.G., Rothery, E.L., Miles, C.S., Walkinshaw, M.D., Reid, G.A., Chapman, S.K.

(2006) J Biological Chem 281: 20589-20597

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Shewanella frigidimarina
Macromolecule	Fumarate reductase flavoprotein subunit (protein)
Unique Ligands	FAD, FUM, HEM, NA

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2BS2 \| pdb_00002bs2	Download File View File

QUINOL:FUMARATE REDUCTASE FROM WOLINELLA SUCCINOGENES

Lancaster, C.R.D.

(2006) EMBO J 25: 4963

Released	2006-10-25
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Wolinella succinogenes
Macromolecule	QUINOL-FUMARATE REDUCTASE DIHEME CYTOCHROME B SUBUNIT C (protein) QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A (protein) QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT B (protein)
Unique Ligands	F3S, FAD, FES, FUM, HEM, LMT, NA, SF4

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2CGO \| pdb_00002cgo	Download File View File

FACTOR INHIBITING HIF-1 ALPHA with fumarate

McDonough, M.A., Clifton, I.J., Schofield, C.J.

(2007) J Biological Chem 282: 3293-3301

Released	2006-12-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR (protein)
Unique Ligands	FE, FUM, SO4

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2E6D \| pdb_00002e6d	Download File View File

Crystal structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with fumarate

Inaoka, D.K., Shimizu, H., Sakamoto, K., Shiba, T., Kurisu, G., Nara, T., Aoki, T., Harada, S., Kita, K.

(2008) Biochemistry 47: 10881-10891

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Trypanosoma cruzi
Macromolecule	Dihydroorotate dehydrogenase (protein)
Unique Ligands	FMN, FUM, GOL, NCO

1 to 25 of 64 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D4E | pdb_00001d4e

1E39 | pdb_00001e39

1GZ3 | pdb_00001gz3

1GZ4 | pdb_00001gz4

1JRX | pdb_00001jrx

1JRY | pdb_00001jry

1JRZ | pdb_00001jrz

1KSS | pdb_00001kss

1KSU | pdb_00001ksu

1LJ1 | pdb_00001lj1

1M64 | pdb_00001m64

1P2E | pdb_00001p2e

1PJ2 | pdb_00001pj2

1PJ3 | pdb_00001pj3

1PJ4 | pdb_00001pj4

1QCO | pdb_00001qco

1QLB | pdb_00001qlb

1UXG | pdb_00001uxg

1UXH | pdb_00001uxh

1UXI | pdb_00001uxi

2B7R | pdb_00002b7r

2B7S | pdb_00002b7s

2BS2 | pdb_00002bs2

2CGO | pdb_00002cgo

2E6D | pdb_00002e6d