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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Acinetobacter baumannii (11)
	Escherichia coli ATCC 8739 (6)
	Escherichia coli C (2)
	Pseudomonas aeruginosa (1)

Taxonomy

Bacteria (20)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.5 - 2.0 (15)
	2.0 - 2.5 (5)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (6)
	2020 - 2024 (12)

Enzyme Classification Name

Lyases (20)

Symmetry Type

Dihedral (20)

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1 to 20 of 20 Structures

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2V5J \| pdb_00002v5j	Download File View File

Apo Class II aldolase HpcH

Rea, D., Fulop, V., Bugg, T.D.H., Roper, D.I.

(2007) J Mol Biology 373: 866

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli C
Macromolecule	2,4-DIHYDROXYHEPT-2-ENE-1,7-DIOIC ACID ALDOLASE (protein)
Unique Ligands	GOL, PO4

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2V5K \| pdb_00002v5k	Download File View File

Class II aldolase HpcH - magnesium - oxamate complex

Rea, D., Fulop, V., Bugg, T.D.H., Roper, D.I.

(2007) J Mol Biology 373: 866

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli C
Macromolecule	2,4-DIHYDROXYHEPT-2-ENE-1,7-DIOIC ACID ALDOLASE (protein)
Unique Ligands	MG, OXM, PO4

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4B5S \| pdb_00004b5s	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with pyruvate

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	3GR, CO, GOL, MG, PO4, PYR

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4B5T \| pdb_00004b5t	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with ketobutyrate

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.923 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	2KT, CO, GOL, MG

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4B5U \| pdb_00004b5u	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with pyruvate and succinic semialdehyde

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.913 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	CO, GOL, MG, PYR, SSN

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4B5V \| pdb_00004b5v	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with 4-hydroxyl-2-ketoheptane-1,7-dioate

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.041 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	E8U, GOL, MG, PYR

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4B5W \| pdb_00004b5w	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase R70A mutant, HpaI, in complex with pyruvate

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.792 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	CA, CO, PYR

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4B5X \| pdb_00004b5x	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase (HpaI), mutant D42A

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	GOL, PO4

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7ET8 \| pdb_00007et8	Download File View File

Crystal structure of thermostable AbHpaI, a class II metal dependent pyruvate aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA

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7ET9 \| pdb_00007et9	Download File View File

Crystal structure of AbHpaI-Zn-pyruvate complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, PYR, ZN

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7ETA \| pdb_00007eta	Download File View File

Crystal structure of AbHpaI-Co-pyruvate complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, CO, PYR

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7ETB \| pdb_00007etb	Download File View File

Crystal structure of AbHpaI-Mn-pyruvate complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, MN, PYR

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7ETC \| pdb_00007etc	Download File View File

Crystal structure of AbHpaI-Zn-(4R)-KDGal complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, JBU, PYR, ZN

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7ETD \| pdb_00007etd	Download File View File

Crystal structure of AbHpaI-Zn-(4S)-KDGlu complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, KDG, ZN

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7ETE \| pdb_00007ete	Download File View File

Crystal structure of AbHpaI-Mg-(4R)-KDGal complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, JBU, MG

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7ETF \| pdb_00007etf	Download File View File

Crystal structure of AbHpaI-Mn-pyruvate-succinic semialdehyde complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, MN, PYR, SSN

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7ETG \| pdb_00007etg	Download File View File

Crystal structure of AbHpaI-Co-pyruvate-succinic semialdehyde complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, CO, PYR, SSN

Explore in 3D

7ETH \| pdb_00007eth	Download File View File

Crystal structure of AbHpaI-Zn-pyruvate-propionaldehyde complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, CBG, PYR, ZN

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7ETI \| pdb_00007eti	Download File View File

Crystal structure of AbHpaI-Zn-pyruvate-4-hydroxybenzaldehyde complex, Class II aldolase, HpaI from Acinetobacter baumannii

Watthaisong, P., Binlaeh, A., Jaruwat, A., Chaiyen, P., Chitnumsub, P., Maenpuen, S.

(2021) J Biological Chem 297: 101280-101280

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Acinetobacter baumannii
Macromolecule	4-hydroxy-2-oxoheptanedioate aldolase (protein)
Unique Ligands	CA, HBA, PYR, ZN

Explore in 3D

7V8T \| pdb_00007v8t	Download File View File

Crystal structure of class II pyruvate aldolase from Pseudomonas aeruginosa.

Seo, P.W., Kim, J.S.

To be published

Released	2022-08-24
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (protein)
Unique Ligands	IOD, P6G

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2V5J | pdb_00002v5j

Apo Class II aldolase HpcH

2V5K | pdb_00002v5k

Class II aldolase HpcH - magnesium - oxamate complex

4B5S | pdb_00004b5s

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with pyruvate

4B5T | pdb_00004b5t

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with ketobutyrate

4B5U | pdb_00004b5u

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with pyruvate and succinic semialdehyde

4B5V | pdb_00004b5v

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with 4-hydroxyl-2-ketoheptane-1,7-dioate

4B5W | pdb_00004b5w

Crystal structures of divalent metal dependent pyruvate aldolase R70A mutant, HpaI, in complex with pyruvate

4B5X | pdb_00004b5x

Crystal structures of divalent metal dependent pyruvate aldolase (HpaI), mutant D42A

7ET8 | pdb_00007et8

Crystal structure of thermostable AbHpaI, a class II metal dependent pyruvate aldolase, HpaI from Acinetobacter baumannii

7ET9 | pdb_00007et9

Crystal structure of AbHpaI-Zn-pyruvate complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETA | pdb_00007eta

Crystal structure of AbHpaI-Co-pyruvate complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETB | pdb_00007etb

Crystal structure of AbHpaI-Mn-pyruvate complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETC | pdb_00007etc

Crystal structure of AbHpaI-Zn-(4R)-KDGal complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETD | pdb_00007etd

Crystal structure of AbHpaI-Zn-(4S)-KDGlu complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETE | pdb_00007ete

Crystal structure of AbHpaI-Mg-(4R)-KDGal complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETF | pdb_00007etf

Crystal structure of AbHpaI-Mn-pyruvate-succinic semialdehyde complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETG | pdb_00007etg

Crystal structure of AbHpaI-Co-pyruvate-succinic semialdehyde complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETH | pdb_00007eth

Crystal structure of AbHpaI-Zn-pyruvate-propionaldehyde complex, Class II aldolase, HpaI from Acinetobacter baumannii

7ETI | pdb_00007eti

Crystal structure of AbHpaI-Zn-pyruvate-4-hydroxybenzaldehyde complex, Class II aldolase, HpaI from Acinetobacter baumannii

7V8T | pdb_00007v8t

Crystal structure of class II pyruvate aldolase from Pseudomonas aeruginosa.

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Structure Determination Methodology

Scientific Name of Source Organism

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Experimental Method

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Release Date

Enzyme Classification Name

Symmetry Type

2V5J | pdb_00002v5j

2V5K | pdb_00002v5k

4B5S | pdb_00004b5s

4B5T | pdb_00004b5t

4B5U | pdb_00004b5u

4B5V | pdb_00004b5v

4B5W | pdb_00004b5w

4B5X | pdb_00004b5x

7ET8 | pdb_00007et8

7ET9 | pdb_00007et9

7ETA | pdb_00007eta

7ETB | pdb_00007etb

7ETC | pdb_00007etc

7ETD | pdb_00007etd

7ETE | pdb_00007ete

7ETF | pdb_00007etf

7ETG | pdb_00007etg

7ETH | pdb_00007eth

7ETI | pdb_00007eti

7V8T | pdb_00007v8t