RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = 3PH

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Mus musculus (4)
	Chlorella ohadii (3)
	Ribes (3)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Desulfocurvibacter africanus (1)

Taxonomy

	Eukaryota (10)
	Bacteria (2)

Experimental Method

	ELECTRON MICROSCOPY (11)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (3)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2015 - 2019 (4)
	2020 - 2024 (8)

Enzyme Classification Name

Oxidoreductases (4)

Membrane Protein Annotation

	MemProtMD (7)
	PDBTM (7)
	OPM (4)
	mpstruc (4)

Symmetry Type

	Asymmetric (7)
	Cyclic (5)

SCOP Classification

	Membrane and cell surface proteins and peptides (2)
	Alpha and beta proteins (a+b) (2)
	All beta proteins (2)

AllSelected

1 to 12 of 12 Structures

Page 1 of 1

Sort by

Explore in 3D

6HIN	Download File View File

Mouse serotonin 5-HT3 receptor, serotonin-bound, F conformation

Polovinkin, L., Neumann, E., Schoehn, G., Nury, H.

(2018) Nature 563: 275-279

Released	2018-11-07
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Mus musculus
Macromolecule	5-hydroxytryptamine receptor 3A (protein)
Unique Ligands	NAG, SRO
Unique branched monosaccharides	NAG

Explore in 3D

6HIO	Download File View File

Mouse serotonin 5-HT3 receptor, serotonin-bound, I1 conformation

Polovinkin, L., Neumann, E., Schoehn, G., Nury, H.

(2018) Nature 563: 275-279

Released	2018-11-07
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Mus musculus
Macromolecule	5-hydroxytryptamine receptor 3A (protein)
Unique Ligands	NAG, SRO
Unique branched monosaccharides	NAG

Explore in 3D

6HIQ	Download File View File

Mouse serotonin 5-HT3 receptor, serotonin-bound, I2 conformation

Polovinkin, L., Neumann, E., Schoehn, G., Nury, H.

(2018) Nature 563: 275-279

Released	2018-11-07
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mus musculus
Macromolecule	5-hydroxytryptamine receptor 3A (protein)
Unique Ligands	NAG, SRO
Unique branched monosaccharides	NAG

Explore in 3D

6HIS	Download File View File

Mouse serotonin 5-HT3 receptor, tropisetron-bound, T conformation

Polovinkin, L., Neumann, E., Schoehn, G., Nury, H.

(2018) Nature 563: 275-279

Released	2018-11-07
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Mus musculus
Macromolecule	5-hydroxytryptamine receptor 3A (protein)
Unique Ligands	TKT
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6ZZX	Download File View File

Structure of low-light grown Chlorella ohadii Photosystem I

Caspy, I., Nelson, N., Nechushtai, R., Neumann, E., Shkolnisky, Y.

(2021) Nat Plants 7: 1314-1322

Released	2021-07-28
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Chlorella ohadii
Macromolecule	Unique protein chains: 23
Unique Ligands	13X, 3PH, 4RF, AXT, BCR, CHL, CL0, CLA, DGA, DGD, ECH, LAP, LHG, LMG, LMT, LPX, LUT, NEX, OLA, P5S, PCW, PLM, PQN, PTY, QTB, RRX, SF4, SPH, SQD, XAT

Explore in 3D

6ZZY	Download File View File

Structure of high-light grown Chlorella ohadii photosystem I

Caspy, I., Nelson, N., Nechushtai, R., Shkolnisky, Y., Neumann, E.

(2021) Nat Plants 7: 1314-1322

Released	2021-07-28
Method	ELECTRON MICROSCOPY 3.16 Å
Organisms	Chlorella ohadii
Macromolecule	Unique protein chains: 22
Unique Ligands	3PH, 4RF, A8S, BCR, C7Z, CHL, CL0, CLA, DGA, DGD, ECH, ERG, GG0, LAP, LHG, LMT, LPX, LUT, OLA, P5S, PCW, PLM, PQN, PTY, QTB, RRX, SF4, SPH, SQD, XAT

Explore in 3D

7A4P	Download File View File

Structure of small high-light grown Chlorella ohadii photosystem I

Caspy, I., Nelson, N., Nechushtai, R., Shkolnisky, Y., Neumann, E.

(2021) Nat Plants 7: 1314-1322

Released	2021-07-28
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Chlorella ohadii
Macromolecule	Unique protein chains: 19
Unique Ligands	3PH, 4RF, BCR, C7Z, CHL, CL0, CLA, DGA, DGD, ECH, ERG, GG0, LAP, LHG, LMT, LPX, LUT, OLA, P5S, PCW, PLM, PQN, PTY, QTB, RRX, SF4, SPH, SQD, XAT

Explore in 3D

7PEG	Download File View File

Structure of the sporulation/germination protein YhcN from Bacillus subtilis

Liu, B., Chan, H., Bauda, E., Contreras-Martel, C., Bellard, L., Villard, A.M., Mas, C., Neumann, E., Fenel, D., Favier, A., Serrano, M., Henriques, A.O.H., Rodrigues, C.D.A., Morlot, C.

(2022) J Struct Biol 214: 107813-107813

Released	2022-08-24
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Probable spore germination lipoprotein YhcN (protein)

Explore in 3D

7PLM	Download File View File

CryoEM reconstruction of pyruvate ferredoxin oxidoreductase (PFOR) in anaerobic conditions

Cherrier, M.V., Vernede, X., Fenel, D., Martin, L., Arragain, B., Neumann, E., Fontecilla Camps, J.C., Schoehn, G., Nicolet, Y.

(2022) Biomolecules 12:

Released	2022-03-23
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Desulfocurvibacter africanus
Macromolecule	Pyruvate:ferredoxin oxidoreductase (protein)
Unique Ligands	CA, MG, SF4, TPP

Explore in 3D

8CJZ	Download File View File

Carin1 bacteriophage mature capsid

d'Acapito, A., Neumann, E., Schoehn, G.

(2023) J Virol 97: e0024823-e0024823

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Ribes
Macromolecule	Capsid Decoration Protein (protein) Major Capsid Protein (protein) Spike Base Protein (protein)

Explore in 3D

8CK0	Download File View File

Carin1 bacteriophage portal assembly

d'Acapito, A., Neumann, E., Schoehn, G.

(2023) J Virol 97: e0024823-e0024823

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Ribes
Macromolecule	Portal protein (protein)

Explore in 3D

8CK1	Download File View File

Carin 1 bacteriophage tail, connector and tail fibers assembly

d'Acapito, A., Neumann, E., Schoehn, G.

(2023) J Virol 97: e0024823-e0024823

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Ribes
Macromolecule	Connector Protein (protein) Tail Nozzle (protein) Tail fibers Dpo36 (protein)

1 to 12 of 12 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification