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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yuan, Q."

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Search Summary

This query matches 175 Structures.

Refinements

Structure Determination Methodology

experimental (175)

Scientific Name of Source Organism

	Homo sapiens (135)
	Mus musculus (36)
	Severe acute respiratory syndrome coronavirus 2 (35)
	Oryctolagus cuniculus (26)
	Bos taurus (16)
	Rattus norvegicus (14)
	synthetic construct (12)
	Lama glama (9)
	Sulfolobus acidocaldarius (3)
	Escherichia coli (2)

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Taxonomy

	Eukaryota (162)
	Riboviria (36)
	other sequences (12)
	Bacteria (7)
	Archaea (3)

Experimental Method

	ELECTRON MICROSCOPY (154)
	X-RAY DIFFRACTION (21)

Polymer Entity Type

Protein (175)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (11)
	2.5 - 3.0 (50)
	3.0 - 3.5 (56)
	3.5 - 4.0 (24)
	4.0 - 4.5 (12)
	> 4.5 (12)

Release Date

	2000 - 2004 (1)
	2015 - 2019 (37)
	2020 - 2024 (137)

Enzyme Classification Name

	Hydrolases (55)
	Isomerases (51)
	Oxidoreductases (7)
	Transferases (5)

Membrane Protein Annotation

	PDBTM (51)
	mpstruc (51)
	OPM (22)
	MemProtMD (18)

Symmetry Type

	Asymmetric (100)
	Cyclic (73)
	Dihedral (2)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a+b) (6)
	All alpha proteins (1)

AllSelected

1 to 25 of 175 Structures

Page 1 of 7

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1R8I	Download File View File

Crystal structure of TraC

Yeo, H.-J., Yuan, Q., Beck, M.R., Baron, C., Waksman, G.

(2003) Proc Natl Acad Sci U S A 100: 15947-15952

Released	2004-01-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	TraC (protein)

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4TZ7	Download File View File

Crystal structure of type I phosphatidylinositol 4-phosphate 5-kinase alpha from Zebrafish

Hu, J., Qin, Y., Wang, J., Li, L., Wu, D., Ha, Y.

(2015) Nat Commun 6: 8205-8205

Released	2015-09-02
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Danio rerio
Macromolecule	Phosphatidylinositol-4-phosphate 5-kinase, type I, alpha (protein)

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4XAE	Download File View File

Structure of Feruloyl-CoA 6-hydroxylase (F6H) from Arabidopsis thaliana

Zhou, D., Kandavelu, P., Zhang, H., Wang, B.C., Rose, J., Yan, Y.

(2015) Sci Rep 5: 10355-10355

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.769 Å
Organisms	Arabidopsis thaliana
Macromolecule	Feruloyl CoA ortho-hydroxylase 1 (protein)
Unique Ligands	NA

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5DH3	Download File View File

Crystal structure of MST2 in complex with XMU-MP-1

Kong, L.L., Yun, C.H.

(2016) Sci Transl Med 8: 352ra108-352ra108

Released	2016-08-31
Method	X-RAY DIFFRACTION 2.468 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase 3 (protein)
Unique Ligands	5BS, CL, SO4

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5T15	Download File View File

Structural basis for gating and activation of RyR1 (30 uM Ca2+ dataset, all particles)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9M	Download File View File

Structure of rabbit RyR1 (Ca2+-only dataset, class 1)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9N	Download File View File

Structure of rabbit RyR1 (Ca2+-only dataset, class 2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9R	Download File View File

Structure of rabbit RyR1 (Ca2+-only dataset, class 3)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9S	Download File View File

Structure of rabbit RyR1 (Ca2+-only dataset, class 4)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

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5T9V	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 1)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TA3	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAL	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 1&2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAM	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 4)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAN	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 3)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAP	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, all particles)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

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5TAQ	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 3&4)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CA, CFF, ZN

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5TAS	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 1)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

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5TAT	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

Explore in 3D

5TAU	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 3)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

Explore in 3D

5TAV	Download File View File

Structure of rabbit RyR1 (Caffeine/ATP/EGTA dataset, class 4)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ATP, CFF, ZN

Explore in 3D

5TAW	Download File View File

Structure of rabbit RyR1 (ryanodine dataset, all particles)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

5TAX	Download File View File

Structure of rabbit RyR1 (ryanodine dataset, class 1)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

5TAY	Download File View File

Structure of rabbit RyR1 (ryanodine dataset, class 2)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

5TAZ	Download File View File

Structure of rabbit RyR1 (ryanodine dataset, class 3)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CA, ZN

Explore in 3D

5TB0	Download File View File

Structure of rabbit RyR1 (EGTA-only dataset, all particles)

Clarke, O.B., des Georges, A., Zalk, R., Marks, A.R., Hendrickson, W.A., Frank, J.

(2016) Cell 167: 145-157.e17

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

1 to 25 of 175 Structures

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