RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "West, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Arabidopsis thaliana (2)
	Gallus gallus (2)
	Helianthus annuus (2)
	Acinetobacter baumannii (1)
	Cucumber mosaic virus (1)
	Human herpesvirus 8 type P (isolate GK18) (1)
	Mus musculus (1)

Taxonomy

	Eukaryota (7)
	Bacteria (1)
	Duplodnaviria (1)
	Riboviria (1)

Experimental Method

	SOLUTION NMR (5)
	X-RAY DIFFRACTION (5)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (10)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (3)
	2015 - 2019 (2)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (2)
	Lyases (2)

Membrane Protein Annotation

	OPM (2)
	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (5)
	Cyclic (2)
	Dihedral (2)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	Peptides (2)

AllSelected

1 to 11 of 11 Structures

Page 1 of 1

Sort by

Explore in 3D

1AUL \| pdb_00001aul	Download File View File

SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE

Kumar, S., Reed, M.W., Gamper Junior, H.B., Gorn, V.V., Lukhtanov, E.A., Foti, M., West, J., Meyer Junior, R.B., Schweitzer, B.I.

(1998) Nucleic Acids Res 26: 831-838

Released	1997-12-24
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPAPGPAPTPAPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PTHXPGPAPTPTPAPTPCPTPG)-3') (nucleic acid)

Explore in 3D

1HHV \| pdb_00001hhv	Download File View File

SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II

Shao, W., Fernandez, E., Navenot, J.M., Wilken, J., Thompson, D.A., Pepiper, S., Schweitzer, B.I., Lolis, E.

(2001) Eur J Biochem 268: 2948-2959

Released	2003-09-16
Method	SOLUTION NMR
Organisms	Human herpesvirus 8 type P (isolate GK18)
Macromolecule	VIRUS CHEMOKINE VMIP-II (protein)

Explore in 3D

1JBL \| pdb_00001jbl	Download File View File

Solution structure of SFTI-1, A cyclic trypsin inhibitor from sunflower seeds

Korsinczky, M.L.J., Schirra, H.J., Rosengren, K.J., West, J., Condie, B.A., Otvos, L., Anderson, M.A., Craik, D.J.

(2001) J Mol Biology 311: 579-591

Released	2001-08-22
Method	SOLUTION NMR
Organisms	Helianthus annuus
Macromolecule	CYCLIC TRYPSIN INHIBITOR (protein)

Explore in 3D

1JBN \| pdb_00001jbn	Download File View File

Solution structure of an acyclic permutant of SFTI-1, A trypsin inhibitor from sunflower seeds

Korsinczky, M.L.J., Schirra, H.J., Rosengren, K.J., West, J., Condie, B.A., Otvos, L., Anderson, M.A., Craik, D.J.

(2001) J Mol Biology 311: 579-591

Released	2001-08-22
Method	SOLUTION NMR
Organisms	Helianthus annuus
Macromolecule	CYCLIC TRYPSIN INHIBITOR (protein)

Explore in 3D

1MI2 \| pdb_00001mi2	Download File View File

SOLUTION STRUCTURE OF MURINE MACROPHAGE INFLAMMATORY PROTEIN-2, NMR, 20 STRUCTURES

Shao, W., Jerva, L.F., West, J., Lolis, E., Schweitzer, B.I.

(1998) Biochemistry 37: 8303-8313

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	MACROPHAGE INFLAMMATORY PROTEIN-2 (protein)

Explore in 3D

5OW6 \| pdb_00005ow6	Download File View File

CryoEM structure of recombinant CMV particles with Tetanus-epitope

Kotecha, A., Stuart, D.I., Backmann, M.

(2017) NPJ Vaccines 2: 30-30

Released	2017-09-13
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Cucumber mosaic virus
Macromolecule	Capsid protein, VP2 (protein) Capsid protein, VP3 (protein) VP1 (protein)

Explore in 3D

6EUS \| pdb_00006eus	Download File View File

Crystal structure of the outer membrane channel DcaP of Acinetobacter baumannii

Zahn, M., van den Berg, B.

(2019) Structure 27: 268-280.e6

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acinetobacter baumannii
Macromolecule	DcaP-like protein (protein)

Explore in 3D

8S2U \| pdb_00008s2u	Download File View File

SSX structure of Lysozyme grown in batch conditions

Stubbs, J., Tews, I., Maly, M.

(2024) IUCrJ 11: 237-248

Released	2024-02-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

Explore in 3D

8S2V \| pdb_00008s2v	Download File View File

SSX structure of Lysozyme grown in microfluidic droplets

Stubbs, J., Tews, I., Maly, M.

(2024) IUCrJ 11: 237-248

Released	2024-02-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

Explore in 3D

8S2W \| pdb_00008s2w	Download File View File

SSX structure of Arabidopsis thaliana Pdx1.3 grown in seeded batch conditions

Stubbs, J., Tews, I., Maly, M.

(2024) IUCrJ 11: 237-248

Released	2024-02-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PDX1.3 (protein)
Unique Ligands	PO4

Explore in 3D

8S2X \| pdb_00008s2x	Download File View File

SSX structure of Arabidopsis thaliana Pdx1.3 grown in microfluidic droplets

Stubbs, J., Tews, I., Maly, M.

(2024) IUCrJ 11: 237-248

Released	2024-02-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PDX1.3 (protein)
Unique Ligands	CIT, PO4

1 to 11 of 11 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AUL | pdb_00001aul

SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE

1HHV | pdb_00001hhv

SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II

1JBL | pdb_00001jbl

Solution structure of SFTI-1, A cyclic trypsin inhibitor from sunflower seeds

1JBN | pdb_00001jbn

Solution structure of an acyclic permutant of SFTI-1, A trypsin inhibitor from sunflower seeds

1MI2 | pdb_00001mi2

SOLUTION STRUCTURE OF MURINE MACROPHAGE INFLAMMATORY PROTEIN-2, NMR, 20 STRUCTURES

5OW6 | pdb_00005ow6

CryoEM structure of recombinant CMV particles with Tetanus-epitope

6EUS | pdb_00006eus

Crystal structure of the outer membrane channel DcaP of Acinetobacter baumannii

8S2U | pdb_00008s2u

SSX structure of Lysozyme grown in batch conditions

8S2V | pdb_00008s2v

SSX structure of Lysozyme grown in microfluidic droplets

8S2W | pdb_00008s2w

SSX structure of Arabidopsis thaliana Pdx1.3 grown in seeded batch conditions

8S2X | pdb_00008s2x

SSX structure of Arabidopsis thaliana Pdx1.3 grown in microfluidic droplets

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AUL | pdb_00001aul

1HHV | pdb_00001hhv

1JBL | pdb_00001jbl

1JBN | pdb_00001jbn

1MI2 | pdb_00001mi2

5OW6 | pdb_00005ow6

6EUS | pdb_00006eus

8S2U | pdb_00008s2u

8S2V | pdb_00008s2v

8S2W | pdb_00008s2w

8S2X | pdb_00008s2x