RCSB PDB: Search

3I6L \| pdb_00003i6l	Download File View File

Newly identified epitope N1 derived from SARS-CoV N protein complexed with HLA-A*2402

Liu, J.W.

(2010) J Virol 84: 11849-11857

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome-related coronavirus
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) Nucleoprotein peptide (protein)

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3VXM \| pdb_00003vxm	Download File View File

The complex between C1-28 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) C1-28 TCR alpha chain (protein) C1-28 TCR beta chain (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)
Unique Ligands	CO

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3VXN \| pdb_00003vxn	Download File View File

HLA-A24 in complex with HIV-1 Nef134-10(wt)

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXO \| pdb_00003vxo	Download File View File

HLA-A24 in complex with HIV-1 Nef134-10(2F)

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXP \| pdb_00003vxp	Download File View File

HLA-A24 in complex with HIV-1 Nef134-10(6L)

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXQ \| pdb_00003vxq	Download File View File

H27-14 TCR specific for HLA-A24-Nef134-10

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	H27-14 TCR alpha chain (protein) H27-14 TCR beta chain (protein)

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3VXR \| pdb_00003vxr	Download File View File

The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(wt) peptide

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) H27-14 TCR alpha chain (protein) H27-14 TCR beta chain (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXS \| pdb_00003vxs	Download File View File

The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(6L) peptide

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) H27-14 TCR alpha chain (protein) H27-14 TCR beta chain (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXT \| pdb_00003vxt	Download File View File

T36-5 TCR specific for HLA-A24-Nef134-10

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	T36-5 TCR alpha chain (protein) T36-5 TCR beta chain (protein)

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3VXU \| pdb_00003vxu	Download File View File

The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) T36-5 TCR alpha chain (protein) T36-5 TCR beta chain (protein)

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3W0W \| pdb_00003w0w	Download File View File

The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide in space group P212121

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.603 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) T36-5 TCR alpha chain (protein) T36-5 TCR beta chain (protein)

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3WL9 \| pdb_00003wl9	Download File View File

HLA-A24 in complex with HIV-1 Nef126-10(8I10F)

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A., Han, C.

(2014) Retrovirology 11: 38-38

Released	2014-06-11
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) Protein Nef (protein)

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3WLB \| pdb_00003wlb	Download File View File

HLA-A24 in complex with HIV-1 Nef126-10(8T10F)

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A., Han, C.

(2014) Retrovirology 11: 38-38

Released	2014-06-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) Protein Nef (protein)

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5XOS \| pdb_00005xos	Download File View File

Crystal structure of HLA-B35 in complex with a pepetide antigen

Shi, Y., Qi, J., Gao, G.F.

(2017) J Virol 91:

Released	2017-06-14
Method	X-RAY DIFFRACTION 1.697 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	An HIV reverse transcriptase epitope (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein)

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5XOT \| pdb_00005xot	Download File View File

Crystal structure of pHLA-B35 in complex with TU55 T cell receptor

Shi, Y., Qi, J., Gao, G.F.

(2017) J Virol 91:

Released	2017-06-14
Method	X-RAY DIFFRACTION 2.787 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	An HIV reverse transcriptase epitope (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein) The Delta chain of TU55 TCR (protein) The beta chain of TU55 TCR (protein)
Unique Ligands	GOL

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5XOV \| pdb_00005xov	Download File View File

Crystal structure of peptide-HLA-A24 bound to S19-2 V-delta/V-beta TCR

Shi, Y., Qi, J., Gao, G.F.

(2017) J Virol 91:

Released	2017-06-14
Method	X-RAY DIFFRACTION 2.684 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) HIV-1 Nef138-10 peptide (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) V-beta chain of T cell receptor (protein) V-delta chain of T cell receptor (protein)

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8GVB \| pdb_00008gvb	Download File View File

The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 peptide

Gao, G.F., Shi, Y., Ma, K., Chai, Y., Guan, J., Qi, J., Tan, S., Dong, T., Iwamoto, A., Kawana-Tachikawa, A.

(2022) J Immunol 209: 1652-1661

Released	2022-10-19
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	HIV-1 06TG.HT008 Homo sapiens
Macromolecule	8-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) MHC class I antigen (protein) TD08 TCR alpha chain (protein) TD08 TCR beta chain (protein)

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8GVG \| pdb_00008gvg	Download File View File

The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 (2F) peptide

Gao, G.F., Shi, Y., Ma, K., Chai, Y., Guan, J., Qi, J., Tan, S., Dong, T., Iwamoto, A., Kawana-Tachikawa, A.

(2022) J Immunol 209: 1652-1661

Released	2022-10-19
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	HIV whole-genome vector AA1305#18 Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) MHC class I antigen (protein) TD08 TCR alpha chain (protein) TD08 TCR beta chain (protein) mutated 8-mer peptide from Protein Nef (protein)

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8GVI \| pdb_00008gvi	Download File View File

The complex between H25-11 TCR and HLA-A24 bound to HIV-1 Nef138-8 peptide

Gao, G.F., Shi, Y., Tan, S., Ma, K., Chai, Y., Qi, J., Kawana-Tachikawa, A., Iwamoto, A., Dong, T., Guan, J.

(2022) J Immunol 209: 1652-1661

Released	2022-10-19
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	HIV whole-genome vector AA1305#18 Homo sapiens
Macromolecule	8-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) H25-11 TCR alpha chain (protein) H25-11 TCR beta chain (protein) MHC class I antigen (protein)

3I6L | pdb_00003i6l

Newly identified epitope N1 derived from SARS-CoV N protein complexed with HLA-A*2402

3VXM | pdb_00003vxm

The complex between C1-28 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide

3VXN | pdb_00003vxn

HLA-A24 in complex with HIV-1 Nef134-10(wt)

3VXO | pdb_00003vxo

HLA-A24 in complex with HIV-1 Nef134-10(2F)

3VXP | pdb_00003vxp

HLA-A24 in complex with HIV-1 Nef134-10(6L)

3VXQ | pdb_00003vxq

H27-14 TCR specific for HLA-A24-Nef134-10

3VXR | pdb_00003vxr

The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(wt) peptide

3VXS | pdb_00003vxs

The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(6L) peptide

3VXT | pdb_00003vxt

T36-5 TCR specific for HLA-A24-Nef134-10

3VXU | pdb_00003vxu

The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide

3W0W | pdb_00003w0w

The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide in space group P212121

3WL9 | pdb_00003wl9

HLA-A24 in complex with HIV-1 Nef126-10(8I10F)

3WLB | pdb_00003wlb

HLA-A24 in complex with HIV-1 Nef126-10(8T10F)

5XOS | pdb_00005xos

Crystal structure of HLA-B35 in complex with a pepetide antigen

5XOT | pdb_00005xot

Crystal structure of pHLA-B35 in complex with TU55 T cell receptor

5XOV | pdb_00005xov

Crystal structure of peptide-HLA-A24 bound to S19-2 V-delta/V-beta TCR

8GVB | pdb_00008gvb

The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 peptide

8GVG | pdb_00008gvg

The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 (2F) peptide

8GVI | pdb_00008gvi

The complex between H25-11 TCR and HLA-A24 bound to HIV-1 Nef138-8 peptide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

3I6L | pdb_00003i6l

3VXM | pdb_00003vxm

3VXN | pdb_00003vxn

3VXO | pdb_00003vxo

3VXP | pdb_00003vxp

3VXQ | pdb_00003vxq

3VXR | pdb_00003vxr

3VXS | pdb_00003vxs

3VXT | pdb_00003vxt

3VXU | pdb_00003vxu

3W0W | pdb_00003w0w

3WL9 | pdb_00003wl9

3WLB | pdb_00003wlb

5XOS | pdb_00005xos

5XOT | pdb_00005xot

5XOV | pdb_00005xov

8GVB | pdb_00008gvb

8GVG | pdb_00008gvg

8GVI | pdb_00008gvi