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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Vargas, C."

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Search Summary

This query matches 47 Structures.

Refinements

Structure Determination Methodology

experimental (47)

Scientific Name of Source Organism

Homo sapiens (47)

Taxonomy

Eukaryota (47)

Experimental Method

	X-RAY DIFFRACTION (46)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (47)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (19)
	2.0 - 2.5 (5)
	2.5 - 3.0 (8)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (13)
	2020 - 2024 (17)
	2025 - 2029 (17)

Enzyme Classification Name

	Isomerases (34)
	Hydrolases (31)
	Transferases (16)

Symmetry Type

	Asymmetric (46)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (12)
	Artifacts (4)

AllSelected

1 to 25 of 47 Structures

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1W83 \| pdb_00001w83	Download File View File

p38 Kinase crystal structure in complex with small molecule inhibitor

Tickle, J., Jhoti, H., Cleasby, A., Devine, L.

(2005) J Med Chem 48: 414-426

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	MITOGEN-ACTIVATED PROTEIN KINASE 14 (protein)
Unique Ligands	L11

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1W84 \| pdb_00001w84	Download File View File

p38 Kinase crystal structure in complex with small molecule inhibitor

Tickle, J., Jhoti, H., Cleasby, A., Devine, L.

(2005) J Med Chem 48: 414-426

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	MITOGEN-ACTIVATED PROTEIN KINASE 14 (protein)
Unique Ligands	L12

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1WBN \| pdb_00001wbn	Download File View File

fragment based p38 inhibitors

Cleasby, A., Devine, L.A., Gill, A.L., Jhoti, H.

(2005) J Med Chem 48: 414

Released	2005-11-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	MITOGEN-ACTIVATED PROTEIN KINASE 14 (protein)
Unique Ligands	L09

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1WBS \| pdb_00001wbs	Download File View File

Identification of novel p38 alpha MAP Kinase inhibitors using fragment-based lead generation.

Tickle, J., Cleasby, A., Devine, L.A., Jhoti, H.

(2005) J Med Chem 48: 414

Released	2005-11-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	MITOGEN-ACTIVATED PROTEIN KINASE 14 (protein)
Unique Ligands	GOL, LI2

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1WBT \| pdb_00001wbt	Download File View File

Identification of novel p38 alpha MAP Kinase inhibitors using fragment-based lead generation.

Tickle, J., Cleasby, A., Devine, L.A., Jhoti, H.

(2005) J Med Chem 48: 414

Released	2005-11-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	MITOGEN-ACTIVATED PROTEIN KINASE 14 (protein)
Unique Ligands	WBT

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1WBV \| pdb_00001wbv	Download File View File

Identification of novel p38 alpha MAP Kinase inhibitors using fragment-based lead generation.

Tickle, J., Cleasby, A., Devine, L.A., Jhoti, H.

(2005) J Med Chem 48: 414

Released	2005-11-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	MITOGEN-ACTIVATED PROTEIN KINASE 14 (protein)
Unique Ligands	DMS, GOL, LI3

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2W1C \| pdb_00002w1c	Download File View File

Structure determination of Aurora Kinase in complex with inhibitor

Howard, S., Berdini, V., Boulstridge, J.A., Carr, M.G., Cross, D.M., Curry, J., Devine, L.A., Early, T.R., Fazal, L., Gill, A.L., Heathcote, M., Maman, S., Matthews, J.E., McMenamin, R.L., Navarro, E.F., O'Brien, M.A., O'Reilly, M., Rees, D.C., Reule, M., Tisi, D., Williams, G., Vinkovic, M., Wyatt, P.G.

(2009) J Med Chem 52: 379

Released	2009-01-27
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	L0C

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2W1D \| pdb_00002w1d	Download File View File

Structure determination of Aurora Kinase in complex with inhibitor

(2009) J Med Chem 52: 379

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	L0D

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2W1E \| pdb_00002w1e	Download File View File

Structure determination of Aurora Kinase in complex with inhibitor

(2009) J Med Chem 52: 379

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	L0E

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2W1F \| pdb_00002w1f	Download File View File

Structure determination of Aurora Kinase in complex with inhibitor

(2009) J Med Chem 52: 379

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	L0F

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2W1G \| pdb_00002w1g	Download File View File

Structure determination of Aurora Kinase in complex with inhibitor

(2009) J Med Chem 52: 379

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	L0G

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2W1H \| pdb_00002w1h	Download File View File

Fragment-Based Discovery of the Pyrazol-4-yl urea (AT9283), a Multi- targeted Kinase Inhibitor with Potent Aurora Kinase Activity

(2009) J Med Chem 52: 379

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	L0F

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2W1I \| pdb_00002w1i	Download File View File

Structure determination of Aurora Kinase in complex with inhibitor

(2009) J Med Chem 52: 379

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	JAK2 (protein)
Unique Ligands	L0I

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8ER6 \| pdb_00008er6	Download File View File

FKBP12-FRB in Complex with Compound 11

Tomlinson, A.C.A., Yano, J.K.

(2023) J Med Chem 66: 149-169

Released	2022-12-28
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) non-specific serine/threonine protein kinase (protein)
Unique Ligands	EDO, XYU

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8ER7 \| pdb_00008er7	Download File View File

FKBP12-FRB in Complex with Compound 12

Tomlinson, A.C.A., Yano, J.K.

(2023) J Med Chem 66: 149-169

Released	2022-12-28
Method	X-RAY DIFFRACTION 3.07 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) non-specific serine/threonine protein kinase (protein)
Unique Ligands	CL, XZ3

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8ERA \| pdb_00008era	Download File View File

RMC-5552 in complex with mTORC1 and FKBP12

Tomlinson, A.C.A., Yano, J.K.

(2023) J Med Chem 66: 149-169

Released	2022-12-28
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Regulatory-associated protein of mTOR (protein) Serine/threonine-protein kinase mTOR (protein) Target of rapamycin complex subunit LST8 (protein)
Unique Ligands	XYU, XZ9

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8G9P \| pdb_00008g9p	Download File View File

Tricomplex of RMC-4998, KRAS G12C, and CypA

Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.

(2023) Science 381: 794-799

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	CL, GNP, MG, YV2

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8G9Q \| pdb_00008g9q	Download File View File

Tricomplex of Compound-1, KRAS G12C, and CypA

Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.

(2023) Science 381: 794-799

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	GNP, MG, YV6

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8TBF \| pdb_00008tbf	Download File View File

Tricomplex of RMC-7977, KRAS WT, and CypA

Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.

(2024) Nature 629: 919-926

Released	2024-02-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	EDO, GNP, MG, ZNI

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8TBG \| pdb_00008tbg	Download File View File

Tricomplex of RMC-7977, HRAS WT, and CypA

Chen, A., Tomlinson, A.C.A., Knox, J.E., Yano, J.K.

(2024) Nature 629: 919-926

Released	2024-02-07
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	GTPase HRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	GNP, GOL, MG, ZNI

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8TBH \| pdb_00008tbh	Download File View File

Tricomplex of RMC-7977, KRAS G12R, and CypA

Bar Ziv, T., Zhang, D., Tomlinson, A.C.A., Knox, J.E., Yano, J.K.

(2024) Nature 629: 919-926

Released	2024-02-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	GNP, MG, ZNI

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8TBI \| pdb_00008tbi	Download File View File

Tricomplex of RMC-7977, NRAS WT, and CypA

Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.

(2024) Nature 629: 919-926

Released	2024-02-07
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	GTPase NRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	GNP, MG, ZNI

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8TBJ \| pdb_00008tbj	Download File View File

Tricomplex of RMC-7977, KRAS G12A, and CypA

Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.

(2024) Nature 629: 919-926

Released	2024-02-07
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	EDO, GNP, GOL, MG, ZNI

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8TBK \| pdb_00008tbk	Download File View File

Tricomplex of RMC-7977, KRAS G12C, and CypA

Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.

(2024) Nature 629: 919-926

Released	2024-02-07
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	GNP, MG, ZNI

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8TBL \| pdb_00008tbl	Download File View File

Tricomplex of RMC-7977, KRAS G12D, and CypA

Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.

(2024) Nature 629: 919-926

Released	2024-02-07
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	GNP, MG, ZNI

1 to 25 of 47 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1W83 | pdb_00001w83

1W84 | pdb_00001w84

1WBN | pdb_00001wbn

1WBS | pdb_00001wbs

1WBT | pdb_00001wbt

1WBV | pdb_00001wbv

2W1C | pdb_00002w1c

2W1D | pdb_00002w1d

2W1E | pdb_00002w1e

2W1F | pdb_00002w1f

2W1G | pdb_00002w1g

2W1H | pdb_00002w1h

2W1I | pdb_00002w1i

8ER6 | pdb_00008er6

8ER7 | pdb_00008er7

8ERA | pdb_00008era

8G9P | pdb_00008g9p

8G9Q | pdb_00008g9q

8TBF | pdb_00008tbf

8TBG | pdb_00008tbg

8TBH | pdb_00008tbh

8TBI | pdb_00008tbi

8TBJ | pdb_00008tbj

8TBK | pdb_00008tbk

8TBL | pdb_00008tbl