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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Tsujimoto, M."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Gallus gallus (6)
	Tequatrovirus T4 (5)
	Homo sapiens (2)
	Bos taurus (1)

Taxonomy

	Eukaryota (9)
	Duplodnaviria (5)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (14)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (2)
	2000 - 2004 (2)
	2010 - 2014 (6)

Enzyme Classification Name

	Hydrolases (14)
	Lyases (5)

Symmetry Type

	Asymmetric (11)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	All alpha proteins (5)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 14 of 14 Structures

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1ENI \| pdb_00001eni	Download File View File

CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS

Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.

(1995) J Mol Biology 249: 360-375

Released	1994-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tequatrovirus T4
Macromolecule	ENDONUCLEASE V (protein)

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1ENJ \| pdb_00001enj	Download File View File

CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS

Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.

(1995) J Mol Biology 249: 360-375

Released	1994-10-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	ENDONUCLEASE V (protein)

Explore in 3D

1ENK \| pdb_00001enk	Download File View File

CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS

Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.

(1995) J Mol Biology 249: 360-375

Released	1994-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	ENDONUCLEASE V (protein)

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1ITQ \| pdb_00001itq	Download File View File

HUMAN RENAL DIPEPTIDASE

Nitanai, Y., Satow, Y., Adachi, H., Tsujimoto, M.

(2002) J Mol Biology 321: 177-184

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	RENAL DIPEPTIDASE (protein)
Unique Ligands	NAG, ZN

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1ITU \| pdb_00001itu	Download File View File

HUMAN RENAL DIPEPTIDASE COMPLEXED WITH CILASTATIN

Nitanai, Y., Satow, Y., Adachi, H., Tsujimoto, M.

(2002) J Mol Biology 321: 177-184

Released	2002-08-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	RENAL DIPEPTIDASE (protein)
Unique Ligands	CIL, NAG, ZN

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1VAS \| pdb_00001vas	Download File View File

ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION

Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E., Morikawa, K.

(1995) Cell 83: 773-782

Released	1996-01-31
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Tequatrovirus T4
Macromolecule	PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1)) (protein) DNA (5'-D(APTPCPGPCPGPTPTPGPCPGPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPCPGPCPAPAPCPGPCPGPA)-3') (nucleic acid)

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1WAB \| pdb_00001wab	Download File View File

PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE

Ho, Y.S., Swenson, L., Derewenda, U., Serre, L., Wei, Y., Dauter, Z., Hattori, M., Aoki, J., Arai, H., Adachi, T., Inoue, K., Derewenda, Z.S.

(1997) Nature 385: 89-93

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE (protein)
Unique Ligands	ACT

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2END \| pdb_00002end	Download File View File

CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS

Vassylyev, D.G., Ariyoshi, M., Matsumoto, O., Katayanagi, K., Ohtsuka, E., Morikawa, K.

(1995) J Mol Biology 249: 360-375

Released	1994-10-15
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Tequatrovirus T4
Macromolecule	ENDONUCLEASE V (protein)

Explore in 3D

3AZ4 \| pdb_00003az4	Download File View File

Crystal structure of Co/O-HEWL

Abe, S., Tsujimoto, M., Yoneda, K., Ohba, M., Hikage, T., Takano, M., Kitagawa, S., Ueno, T.

(2012) Small 8: 1314-1319

Released	2012-05-09
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, CO

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3AZ5 \| pdb_00003az5	Download File View File

Crystal structure of Pt/O-HEWL

Abe, S., Tsujimoto, M., Yoneda, K., Ohba, M., Hikage, T., Takano, M., Kitagawa, S., Ueno, T.

(2012) Small 8: 1314-1319

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	PT

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3AZ6 \| pdb_00003az6	Download File View File

Crystal structure of Co/T-HEWL

Abe, S., Tsujimoto, M., Yoneda, K., Ohba, M., Hikage, T., Takano, M., Kitagawa, S., Ueno, T.

(2012) Small 8: 1314-1319

Released	2012-05-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, CO, GOL, NA

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3AZ7 \| pdb_00003az7	Download File View File

Crystal structure of Pt/T-HEWL

Abe, S., Tsujimoto, M., Yoneda, K., Ohba, M., Hikage, T., Takano, M., Kitagawa, S., Ueno, T.

(2012) Small 8: 1314-1319

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	NA, PT

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4W94 \| pdb_00004w94	Download File View File

Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2

Tabe, H., Fujita, K., Abe, S., Tsujimoto, M., Kuchimaru, T., Kizaka-Kondo, S., Takano, M., Kitagawa, S., Ueno, T.

(2015) Inorg Chem 54: 215-220

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, DMF, NA, RU, RU1

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4W96 \| pdb_00004w96	Download File View File

Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2 followed by the reaction in deoxy-myoglobin solution

Tabe, H., Fujita, K., Abe, S., Tsujimoto, M., Kuchimaru, T., Kizaka-Kondo, S., Takano, M., Kitagawa, S., Ueno, T.

(2015) Inorg Chem 54: 215-220

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, DMF, NA, RU, RU1

1 to 14 of 14 Structures

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1ENI | pdb_00001eni

CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS

1ENJ | pdb_00001enj

CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS

1ENK | pdb_00001enk

CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS

1ITQ | pdb_00001itq

HUMAN RENAL DIPEPTIDASE

1ITU | pdb_00001itu

HUMAN RENAL DIPEPTIDASE COMPLEXED WITH CILASTATIN

1VAS | pdb_00001vas

ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA RECOGNITION

1WAB | pdb_00001wab

PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE

2END | pdb_00002end

CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE MUTANTS

3AZ4 | pdb_00003az4

Crystal structure of Co/O-HEWL

3AZ5 | pdb_00003az5

Crystal structure of Pt/O-HEWL

3AZ6 | pdb_00003az6

Crystal structure of Co/T-HEWL

3AZ7 | pdb_00003az7

Crystal structure of Pt/T-HEWL

4W94 | pdb_00004w94

Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2

4W96 | pdb_00004w96

Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2 followed by the reaction in deoxy-myoglobin solution

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ENI | pdb_00001eni

1ENJ | pdb_00001enj

1ENK | pdb_00001enk

1ITQ | pdb_00001itq

1ITU | pdb_00001itu

1VAS | pdb_00001vas

1WAB | pdb_00001wab

2END | pdb_00002end

3AZ4 | pdb_00003az4

3AZ5 | pdb_00003az5

3AZ6 | pdb_00003az6

3AZ7 | pdb_00003az7

4W94 | pdb_00004w94

4W96 | pdb_00004w96