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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Torres, V.J."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Staphylococcus aureus (13)
	Homo sapiens (7)
	synthetic construct (3)
	Mus musculus (2)
	Staphylococcaceae (2)
	Staphylococcus aureus subsp. aureus CN1 (1)

Taxonomy

	Bacteria (16)
	Eukaryota (9)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.0 - 3.5 (4)
	3.5 - 4.0 (4)

Release Date

	2010 - 2014 (1)
	2020 - 2024 (16)

Membrane Protein Annotation

	mpstruc (9)
	PDBTM (8)
	MemProtMD (7)
	OPM (6)

Symmetry Type

	Asymmetric (14)
	Cyclic (4)
	Dihedral (1)

SCOP Classification

Membrane and cell surface proteins and peptides (7)

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1 to 17 of 17 Structures

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4RBR \| pdb_00004rbr	Download File View File

Crystal structure of Repressor of Toxin (Rot), a central regulator of Staphylococcus aureus virulence

Killikelly, A., Jakoncic, J., Sampson, J.M., Kong, X.-P.

(2015) J Bacteriol 197: 188-200

Released	2014-11-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus subsp. aureus CN1
Macromolecule	HTH-type transcriptional regulator rot (protein)
Unique Ligands	CL

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6U2S \| pdb_00006u2s	Download File View File

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Liu, J., Kozhaya, L., Torres, V.J., Unutmaz, D., Lu, M.

(2020) J Biological Chem 295: 5944-5959

Released	2020-03-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Staphylococcus aureus
Macromolecule	Bi-component leukocidin LukED subunit D (protein)
Unique Ligands	PQJ

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6U33 \| pdb_00006u33	Download File View File

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Liu, J., Kozhaya, L., Torres, V.J., Unutmaz, D., Lu, M.

(2020) J Biological Chem 295: 5944-5959

Released	2020-03-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Staphylococcus aureus
Macromolecule	Bi-component leukocidin LukED subunit D (protein)
Unique Ligands	NI

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6U3F \| pdb_00006u3f	Download File View File

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Liu, J., Kozhaya, L., Torres, V.J., Unutmaz, D., Lu, M.

(2020) J Biological Chem 295: 5944-5959

Released	2020-03-25
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Staphylococcus aureus
Macromolecule	Panton-Valentine Leucocidin F (protein)
Unique Ligands	PQJ, SO4

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6U3T \| pdb_00006u3t	Download File View File

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Liu, J., Kozhaya, L., Torres, V.J., Unutmaz, D., Lu, M.

(2020) J Biological Chem 295: 5944-5959

Released	2020-03-25
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Staphylococcus aureus
Macromolecule	Alpha-hemolysin (protein)
Unique Ligands	PQJ, SO4

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6U3Y \| pdb_00006u3y	Download File View File

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Liu, J., Kozhaya, L., Torres, V.J., Unutmaz, D., Lu, M.

(2020) J Biological Chem 295: 5944-5959

Released	2020-03-25
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Staphylococcus aureus
Macromolecule	Gamma-hemolysin subunit A (protein) Panton-Valentine Leucocidin F (protein)
Unique Ligands	ACT, PQJ, SO4

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6U49 \| pdb_00006u49	Download File View File

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Liu, J., Kozhaya, L., Torres, V.J., Unutmaz, D., Lu, M.

(2020) J Biological Chem 295: 5944-5959

Released	2020-03-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Staphylococcus aureus
Macromolecule	Alpha-hemolysin (protein)
Unique Ligands	PQJ, SO4

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6U4P \| pdb_00006u4p	Download File View File

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Liu, J., Kozhaya, L., Torres, V.J., Unutmaz, D., Lu, M.

(2020) J Biological Chem 295: 5944-5959

Released	2020-03-25
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Staphylococcus aureus
Macromolecule	Alpha-hemolysin (protein)
Unique Ligands	PQJ, SO4

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7LO7 \| pdb_00007lo7	Download File View File

NorA in complex with Fab25

Brawley, D.N., Sauer, D.B., Song, J.M., Koide, A., Koide, S., Traaseth, N.J., Wang, D.N.

(2022) Nat Chem Biol 18: 706-712

Released	2022-04-20
Method	ELECTRON MICROSCOPY 3.74 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	Fab25 Heavy Chain (protein) Fab25 Light Chain (protein) Quinolone resistance protein NorA (protein)

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7LO8 \| pdb_00007lo8	Download File View File

NorA in complex with Fab36

Brawley, D.N., Sauer, D.B., Song, J.M., Koide, A., Koide, S., Traaseth, N.J., Wang, D.N.

(2022) Nat Chem Biol 18: 706-712

Released	2022-04-20
Method	ELECTRON MICROSCOPY 3.16 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	Fab36 Heavy Chain (protein) Fab36 Light Chain (protein) Quinolone resistance protein NorA (protein)

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7T82 \| pdb_00007t82	Download File View File

Crystal Structure of LEUKOCIDIN E/CENTYRIN S26/FAB B438

Luo, J., Malia, T.J., Buckley, P.T.

(2023) Cell Host Microbe 31: 751-765.e11

Released	2023-01-11
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Mus musculus Staphylococcaceae synthetic construct
Macromolecule	Antibody Fab Heavy Chain (protein) Antibody Fab Light Chain (protein) Centyrin S26 (protein) Leukocidin E (protein)

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7T86 \| pdb_00007t86	Download File View File

Crystal Structure of Fab CR5133 / Phospho-SD Peptide Complex

Luo, J., Malia, T.J., Buckley, P.T.

(2023) Cell Host Microbe 31: 751-765.e11

Released	2023-01-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Antibody Fab CR5133 Heavy Chain (protein) Antibody Fab CR5133 Light Chain (protein) Phospho-SD Peptide (protein)
Unique Ligands	NAG

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7T87 \| pdb_00007t87	Download File View File

CRYSTAL STRUCTURE OF LEUKOCIDIN AB/CENTYRIN S17/FAB 214F COMPLEX

Luo, J., Malia, T.J., Buckley, P.T.

(2023) Cell Host Microbe 31: 751-765.e11

Released	2023-01-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus Staphylococcaceae synthetic construct
Macromolecule	Antibody Fab B214 Heavy Chain (protein) Antibody Fab B214 Light Chain (protein) Centyrin S17 (protein) Leukocidin A (protein) Leukocidin B (protein)

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8TTE \| pdb_00008tte	Download File View File

Protonated state of NorA at pH 5.0

Li, J.P., Li, Y., Koide, A., Kuang, H.H., Torres, V.J., Koide, S., Wang, D.N., Traaseth, N.J.

(2024) Nat Commun 15: 4494-4494

Released	2024-05-29
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	FabDA1 CDRH3 loop (protein) Quinolone resistance protein NorA (protein)

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8TTF \| pdb_00008ttf	Download File View File

NorA double mutant - E222QD307N at pH 7.5

Li, J.P., Li, Y., Koide, A., Kuang, H.H., Torres, V.J., Koide, S., Wang, D.N., Traaseth, N.J.

(2024) Nat Commun 15: 4494-4494

Released	2024-05-29
Method	ELECTRON MICROSCOPY 3.61 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	Heavy Chain of FabDA1 Variable Domain (protein) Light Chain of FabDA1 Variable Domain (protein) Quinolone resistance protein NorA (protein)

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8TTG \| pdb_00008ttg	Download File View File

NorA single mutant - E222Q at pH 7.5

Li, J.P., Li, Y., Koide, A., Kuang, H.H., Torres, V.J., Koide, S., Wang, D.N., Traaseth, N.J.

(2024) Nat Commun 15: 4494-4494

Released	2024-05-29
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	FabDA1 CDRH3 loop (protein) Quinolone resistance protein NorA (protein)

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8TTH \| pdb_00008tth	Download File View File

NorA single mutant - D307N at pH 7.5

Li, J.P., Li, Y., Koide, A., Kuang, H.H., Torres, V.J., Koide, S., Wang, D.N., Traaseth, N.J.

(2024) Nat Commun 15: 4494-4494

Released	2024-05-29
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	Heavy Chain of FabDA1 Variable Domain (protein) Light Chain of FabDA1 Variable Domain (protein) Quinolone resistance protein NorA (protein)

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4RBR | pdb_00004rbr

Crystal structure of Repressor of Toxin (Rot), a central regulator of Staphylococcus aureus virulence

6U2S | pdb_00006u2s

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

6U33 | pdb_00006u33

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

6U3F | pdb_00006u3f

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

6U3T | pdb_00006u3t

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

6U3Y | pdb_00006u3y

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

6U49 | pdb_00006u49

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

6U4P | pdb_00006u4p

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

7LO7 | pdb_00007lo7

NorA in complex with Fab25

7LO8 | pdb_00007lo8

NorA in complex with Fab36

7T82 | pdb_00007t82

Crystal Structure of LEUKOCIDIN E/CENTYRIN S26/FAB B438

7T86 | pdb_00007t86

Crystal Structure of Fab CR5133 / Phospho-SD Peptide Complex

7T87 | pdb_00007t87

CRYSTAL STRUCTURE OF LEUKOCIDIN AB/CENTYRIN S17/FAB 214F COMPLEX

8TTE | pdb_00008tte

Protonated state of NorA at pH 5.0

8TTF | pdb_00008ttf

NorA double mutant - E222QD307N at pH 7.5

8TTG | pdb_00008ttg

NorA single mutant - E222Q at pH 7.5

8TTH | pdb_00008tth

NorA single mutant - D307N at pH 7.5

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4RBR | pdb_00004rbr

6U2S | pdb_00006u2s

6U33 | pdb_00006u33

6U3F | pdb_00006u3f

6U3T | pdb_00006u3t

6U3Y | pdb_00006u3y

6U49 | pdb_00006u49

6U4P | pdb_00006u4p

7LO7 | pdb_00007lo7

7LO8 | pdb_00007lo8

7T82 | pdb_00007t82

7T86 | pdb_00007t86

7T87 | pdb_00007t87

8TTE | pdb_00008tte

8TTF | pdb_00008ttf

8TTG | pdb_00008ttg

8TTH | pdb_00008tth