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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Thanassi, D.G."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

Escherichia coli (9)

Taxonomy

Bacteria (9)

Experimental Method

	ELECTRON MICROSCOPY (5)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (3)

Membrane Protein Annotation

	MemProtMD (8)
	OPM (8)
	PDBTM (8)
	mpstruc (8)

Symmetry Type

	Asymmetric (7)
	Cyclic (2)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 9 of 9 Structures

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Explore in 3D

2VQI \| pdb_00002vqi	Download File View File

Structure of the P pilus usher (PapC) translocation pore

Remaut, H., Tang, C., Henderson, N.S., Pinkner, J.S., Wang, T., Hultgren, S.J., Thanassi, D.G., Li, H., Waksman, G.

(2008) Cell 133: 640-652

Released	2008-05-27
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	OUTER MEMBRANE USHER PROTEIN PAPC (protein)
Unique Ligands	C8E, LDA

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3OHN \| pdb_00003ohn	Download File View File

Crystal structure of the FimD translocation domain

Wang, T., Li, H.

(2011) Nature 474: 49-53

Released	2011-06-01
Method	X-RAY DIFFRACTION 3.011 Å
Organisms	Escherichia coli
Macromolecule	Outer membrane usher protein FimD (protein)

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3RFZ \| pdb_00003rfz	Download File View File

Crystal structure of the FimD usher bound to its cognate FimC:FimH substrate

Phan, G., Remaut, H., Lebedev, A., Geibel, S., Waksman, G.

(2011) Nature 474: 49-53

Released	2011-06-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein fimC (protein) Outer membrane usher protein, type 1 fimbrial synthesis (protein) Type 1 fimbrial adhesin (protein)
Unique Ligands	SO4

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5K93 \| pdb_00005k93	Download File View File

PapD wild-type chaperone

Sarowar, S., Li, H.

(2016) J Bacteriol 198: 2360-2369

Released	2016-07-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein PapD (protein)

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6E14 \| pdb_00006e14	Download File View File

Handover mechanism of the growing pilus by the bacterial outer membrane usher FimD

Du, M., Yuan, Z., Yu, H., Henderson, N., Sarowar, S., Zhao, G., Werneburg, G.T., Thanassi, D.G., Li, H.

(2018) Nature 562: 444-447

Released	2018-10-17
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein FimC (protein) Fimbrial biogenesis outer membrane usher protein (protein) Protein FimF (protein) Protein FimG (protein) Type 1 fimbrin D-mannose specific adhesin (protein)

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6E15 \| pdb_00006e15	Download File View File

Handover mechanism of the growing pilus by the bacterial outer membrane usher FimD

Du, M., Yuan, Z., Yu, H., Henderson, N., Sarowar, S., Zhao, G., Werneburg, G.T., Thanassi, D.G., Li, H.

(2018) Nature 562: 444-447

Released	2018-10-17
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein FimC (protein) Fimbrial biogenesis outer membrane usher protein (protein) Protein FimF (protein) Protein FimG (protein) Type 1 fimbrin D-mannose specific adhesin (protein)

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7LHG \| pdb_00007lhg	Download File View File

Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapG in the first conformation

Du, M., Yuan, Z., Werneburg, G., Henderson, N., Chauhan, H., Kovach, A., Zhao, G., Johl, J., Li, H., Thanassi, D.

(2021) Nat Commun 12: 5207-5207

Released	2021-08-11
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein PapD (protein) Fimbrial adapter PapK (protein) P fimbria tip G-adhesin PapG-II (protein) P fimbrial usher protein PapC (protein)

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7LHH \| pdb_00007lhh	Download File View File

Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapG in the second conformation

Du, M., Yuan, Z., Werneburg, G., Henderson, N., Chauhan, H., Kovach, A., Zhao, G., Johl, J., Li, H., Thanassi, D.

(2021) Nat Commun 12: 5207-5207

Released	2021-08-11
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein PapD (protein) Fimbrial adapter PapK (protein) P fimbria tip G-adhesin PapG-II (protein) P fimbrial usher protein PapC (protein)

Explore in 3D

7LHI \| pdb_00007lhi	Download File View File

Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapF-PapG

Du, M., Yuan, Z., Werneburg, G., Henderson, N., Chauhan, H., Kovach, A., Zhao, G., Johl, J., Li, H., Thanassi, D.

(2021) Nat Commun 12: 5207-5207

Released	2021-08-11
Method	ELECTRON MICROSCOPY 7.6 Å
Organisms	Escherichia coli
Macromolecule	Chaperone protein PapD (protein) Fimbrial adapter PapK (protein) Fimbrial protein (protein) P fimbria tip G-adhesin PapG-II (protein) P fimbrial usher protein PapC (protein)

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2VQI | pdb_00002vqi

Structure of the P pilus usher (PapC) translocation pore

3OHN | pdb_00003ohn

Crystal structure of the FimD translocation domain

3RFZ | pdb_00003rfz

Crystal structure of the FimD usher bound to its cognate FimC:FimH substrate

5K93 | pdb_00005k93

PapD wild-type chaperone

6E14 | pdb_00006e14

Handover mechanism of the growing pilus by the bacterial outer membrane usher FimD

6E15 | pdb_00006e15

Handover mechanism of the growing pilus by the bacterial outer membrane usher FimD

7LHG | pdb_00007lhg

Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapG in the first conformation

7LHH | pdb_00007lhh

Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapG in the second conformation

7LHI | pdb_00007lhi

Cryo-EM structure of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapF-PapG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2VQI | pdb_00002vqi

3OHN | pdb_00003ohn

3RFZ | pdb_00003rfz

5K93 | pdb_00005k93

6E14 | pdb_00006e14

6E15 | pdb_00006e15

7LHG | pdb_00007lhg

7LHH | pdb_00007lhh

7LHI | pdb_00007lhi