RCSB PDB: Search

5E3H \| pdb_00005e3h	Download File View File

Structural Basis for RNA Recognition and Activation of RIG-I

Jiang, F., Miller, M.T., Marcotrigiano, J.

(2011) Nature 479: 423-427

Released	2015-11-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Probable ATP-dependent RNA helicase DDX58 (protein) RNA (5'-R(CPGPAPCPGPCPUPAPGPCPGPU)-3') (nucleic acid)
Unique Ligands	ADP, BEF, GOL, MG, ZN

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5ISL \| pdb_00005isl	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor C49 (2-{[(2-{[(E)-2-(dimethylamino)ethenyl](ethyl)amino}-2-oxoethyl)amino]methyl}pyridine-4-carboxylic acid)

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.694 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein)
Unique Ligands	EDO, GOL, MMK, MN

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5IVB \| pdb_00005ivb	Download File View File

A High Resolution Structure of a Linked KDM5A Jmj Domain with Alpha-Ketoglutarate

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.389 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A,Lysine-specific demethylase 5A (protein)
Unique Ligands	AKG, GOL, MN

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5IVC \| pdb_00005ivc	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor N3 (4'-[(2-phenylethyl)carbamoyl][2,2'-bipyridine]-4-carboxylic acid)

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.573 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein)
Unique Ligands	6E7, EDO, GOL, MN

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5IVE \| pdb_00005ive	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor N8 ( 5-methyl-7-oxo-6-(propan-2-yl)-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonitrile)

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.783 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein)
Unique Ligands	6E8, MN

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5IVF \| pdb_00005ivf	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor N10 8-(1-methyl-1H-imidazol-4-yl)-2-(4,4,4-trifluorobutoxy)pyrido[3,4-d]pyrimidin-4-ol

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.683 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein)
Unique Ligands	6EB, MN

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5IVJ \| pdb_00005ivj	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor N11 [3-({1-[2-(4,4-difluoropiperidin-1-yl)ethyl]-5-fluoro-1H-indazol-3-yl}amino)pyridine-4-carboxylic acid]

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.569 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein)
Unique Ligands	6ED, DMS, GOL, MN

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5IVV \| pdb_00005ivv	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor N12 [3-((1-methyl-1H-pyrrolo[2,3-b]pyridin-3-yl)amino)isonicotinic acid]

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.848 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein)
Unique Ligands	6EN, MN

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5IVY \| pdb_00005ivy	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor N16 [3-(2-(4-chlorophenyl)acetamido)isonicotinic acid]

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein)
Unique Ligands	6EO, MN

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5IW0 \| pdb_00005iw0	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor N19 [2-(5-((4-chloro-2-methylbenzyl)oxy)-1H-pyrazol-1-yl)isonicotinic acid]

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A (protein)
Unique Ligands	6EP, AKG, EDO, GOL, MN

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5IWF \| pdb_00005iwf	Download File View File

Linked KDM5A Jmj Domain Bound to the Inhibitor 2-(((2-((2-(dimethylamino)ethyl)(ethyl)amino)-2-oxoethyl)amino)methyl)isonicotinamid

Horton, J.R., Cheng, X.

(2016) Cell Chem Biol 23: 769-781

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.289 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A,Lysine-specific demethylase 5A (protein)
Unique Ligands	LQT, MN

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6BGU \| pdb_00006bgu	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(propoxy)methyl)-1H-pyrrolo[3,2-b]pyridine (Compound N9)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.684 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DKP, DMS, EDO, GOL, MN, SO4

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6BGV \| pdb_00006bgv	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(piperidin-1-yl)ethoxy)methyl)-1l2-pyrrolo[3,2-b]pyridine-7-carboxylic acid (Compound N40)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.592 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DMS, DQG, EDO, GOL, MN

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6BGW \| pdb_00006bgw	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(4,4-difluoropiperidin-1-yl)ethoxy)methyl)-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid(Compound N41)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.644 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DKS, DMS, GOL, MN

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6BGX \| pdb_00006bgx	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)((4,4-difluorocyclohexyl)methoxy)methyl)-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid(Compound N42)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.882 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DKV, EDO, GOL, MN

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6BGY \| pdb_00006bgy	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(1-methylpyrrolidin-2-yl)ethoxy)methyl)-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid(Compound 46)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A,linked KDM5A JMJ domain (protein)
Unique Ligands	DLJ, DMS, EDO, GOL, MN

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6BGZ \| pdb_00006bgz	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(1-methyl-1H-imidazol-2-yl)ethoxy)methyl)-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid (Compound N47)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.688 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DNV, GOL, MN

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6BH0 \| pdb_00006bh0	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (R)-2-((2-chlorophenyl)(2-(piperidin-1-yl)ethoxy)methyl)-1l2-pyrrolo[3,2-b]pyridine-7-carboxylic acid (Compound N51)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.985 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DMS, DO1, MN

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6BH1 \| pdb_00006bh1	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (S)-2-((2-chlorophenyl)(2-(piperidin-1-yl)ethoxy)methyl)-1l2-pyrrolo[3,2-b]pyridine-7-carboxylic acid (Compound N52)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.932 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DMS, DQG, EDO, MN

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6BH2 \| pdb_00006bh2	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (R)-N-(1-(3-isopropyl-1H-pyrazole-5-carbonyl)pyrrolidin-3-yl)cyclopropanecarboxamide (Compound N54)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.447 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	90V, EDO, GOL, MN

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6BH3 \| pdb_00006bh3	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (S)-N-(1-(3-isopropyl-1H-pyrazole-5-carbonyl)pyrrolidin-3-yl)cyclopropanecarboxamide (Compound N55)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DMS, DQJ, EDO, GOL, MN

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6BH4 \| pdb_00006bh4	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 5-(1-(tert-butyl)-1H-pyrazol-4-yl)-6-isopropyl-7-oxo-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonitrile (Compound N75/CPI-48)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 2.047 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DQS, EDO, GOL, MN

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6BH5 \| pdb_00006bh5	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(3-(piperidin-1-yl)propoxy)methyl)-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid (Compound N48)

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 3193-3208

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.651 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 5A, linked KDM5A JMJ domain (protein)
Unique Ligands	DNY, EDO, GOL, MN

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6DQ4 \| pdb_00006dq4	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR GSK-J1

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 10588-10601

Released	2018-11-21
Method	X-RAY DIFFRACTION 1.392 Å
Organisms	Homo sapiens
Macromolecule	Linked KDM5A Jmj Domain (protein)
Unique Ligands	DMS, GOL, K0I, MN, SO4

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6DQ5 \| pdb_00006dq5	Download File View File

LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N43 i.e. 3-((6-(4-acryloyl-1,4-diazepan-1-yl)-2-(pyridin-2-yl)pyrimidin-4-yl)amino)propanoic acid

Horton, J.R., Cheng, X.

(2018) J Med Chem 61: 10588-10601

Released	2018-11-21
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	Linked KDM5A Jmj Domain (protein)
Unique Ligands	H6G, MN

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5E3H | pdb_00005e3h

5ISL | pdb_00005isl

5IVB | pdb_00005ivb

5IVC | pdb_00005ivc

5IVE | pdb_00005ive

5IVF | pdb_00005ivf

5IVJ | pdb_00005ivj

5IVV | pdb_00005ivv

5IVY | pdb_00005ivy

5IW0 | pdb_00005iw0

5IWF | pdb_00005iwf

6BGU | pdb_00006bgu

6BGV | pdb_00006bgv

6BGW | pdb_00006bgw

6BGX | pdb_00006bgx

6BGY | pdb_00006bgy

6BGZ | pdb_00006bgz

6BH0 | pdb_00006bh0

6BH1 | pdb_00006bh1

6BH2 | pdb_00006bh2

6BH3 | pdb_00006bh3

6BH4 | pdb_00006bh4

6BH5 | pdb_00006bh5

6DQ4 | pdb_00006dq4

6DQ5 | pdb_00006dq5