RCSB PDB: Search

4O9M \| pdb_00004o9m	Download File View File

Human DNA polymerase beta complexed with adenylated tetrahydrofuran (abasic site) containing DNA

Caglayan, M., Batra, V.K., Sassa, A., Prasad, R., Wilson, S.H.

(2014) Nat Struct Mol Biol 21: 497-499

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.295 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase beta (protein) DNA (5'-D(CPCPGPAPCPAPGPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPCPC)-3') (nucleic acid) (5'-D(PGPTPCPGPG)-3'); (hybrid)
Unique Ligands	2RW, NA

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6VEZ \| pdb_00006vez	Download File View File

DNA Polymerase Mu, 8-oxorGTP:At Pre-Catalytic Ternary Complex, 20 mM Ca2+ (60 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.875 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	8GT, CA, DTT, EDO, EPE, NA

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6VF0 \| pdb_00006vf0	Download File View File

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8GM))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	8GT, CL, DTT, EDO, EPE, MG, NA, PPV

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6VF1 \| pdb_00006vf1	Download File View File

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (120 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8GM))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DTT, EDO, EPE, GOA, MG, NA

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6VF2 \| pdb_00006vf2	Download File View File

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (960 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8GM))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, MG, NA

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6VF3 \| pdb_00006vf3	Download File View File

DNA Polymerase Mu, 8-oxorGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.521 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	8GT, DTT, EDO, EPE, MN, NA

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6VF4 \| pdb_00006vf4	Download File View File

DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (30 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8GM))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	8GT, DTT, EDO, EPE, MN, NA, PPV

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6VF5 \| pdb_00006vf5	Download File View File

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (120 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8GM))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DTT, EDO, EPE, MN, NA, OXL

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6VF6 \| pdb_00006vf6	Download File View File

DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mn2+ (960 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8GM))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, GOA, MN, NA

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6VF7 \| pdb_00006vf7	Download File View File

DNA Polymerase Mu, 8-oxodGTP:At Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.871 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	8DG, DTT, EDO, EPE, MN, NA

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6VF8 \| pdb_00006vf8	Download File View File

DNA Polymerase Mu, 8-oxorGTP:Ct Pre-Catalytic Ternary Complex, 20 mM Ca2+ (120 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	8GT, CA, DTT, EDO, EPE, NA

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6VF9 \| pdb_00006vf9	Download File View File

DNA Polymerase Mu, 8-oxorGTP:Ct Ternary Complex, 50 mM Mg2+ (2160 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	CL, DTT, EDO, EPE, MG, NA

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6VFA \| pdb_00006vfa	Download File View File

DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	8GT, DTT, EDO, EPE, MN, NA

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6VFB \| pdb_00006vfb	Download File View File

DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8GM))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	8GT, DTT, EDO, EPE, MN, NA, PPV

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6VFC \| pdb_00006vfc	Download File View File

DNA Polymerase Mu, 8-oxorGTP:Ct Product State Ternary Complex, 50 mM Mn2+ (2160 min)

Jamsen, J.A., Wilson, S.H.

To be published

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8GM))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, MN, NA, PO4

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7KSS \| pdb_00007kss	Download File View File

DNA Polymerase Mu, dGTP:Ct Pre-Catalytic Ground State Ternary Complex, 10 mM Ca2+ (20min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-05-11
Method	X-RAY DIFFRACTION 1.503 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	CA, CL, DGT, EDO, EPE, NA

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7KST \| pdb_00007kst	Download File View File

DNA Polymerase Mu, dGTP:Ct Reaction State Ternary Complex, 10 mM Mn2+ (2min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DGT, DTT, EDO, EPE, MN, NA, PPV

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7KSU \| pdb_00007ksu	Download File View File

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (4min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, MN, NA, PPV

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7KSV \| pdb_00007ksv	Download File View File

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, GOA, MN, NA

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7KSW \| pdb_00007ksw	Download File View File

DNA Polymerase Mu, dGTP:Ct Reaction State Ternary Complex, 10 mM Mg2+ (10min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DGT, DTT, EDO, EPE, MG, NA, PPV

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7KSX \| pdb_00007ksx	Download File View File

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (30min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, MG, NA, PPV

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7KSY \| pdb_00007ksy	Download File View File

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.577 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, GOA, MG, NA

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7KSZ \| pdb_00007ksz	Download File View File

DNA Polymerase Mu, dGTP:At Pre-Catalytic Ground State Ternary Complex, 10 mM Ca2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.417 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	CA, DGT, DTT, EDO, EPE, NA

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7KT0 \| pdb_00007kt0	Download File View File

DNA Polymerase Mu, dGTP:At Ground State Ternary Complex, 50 mM Mg2+ (60min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	CL, DGT, DTT, EDO, EPE, MG, NA

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7KT1 \| pdb_00007kt1	Download File View File

DNA Polymerase Mu, dGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (180min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.665 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DGT, EDO, EPE, MN, NA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

4O9M | pdb_00004o9m

6VEZ | pdb_00006vez

6VF0 | pdb_00006vf0

6VF1 | pdb_00006vf1

6VF2 | pdb_00006vf2

6VF3 | pdb_00006vf3

6VF4 | pdb_00006vf4

6VF5 | pdb_00006vf5

6VF6 | pdb_00006vf6

6VF7 | pdb_00006vf7

6VF8 | pdb_00006vf8

6VF9 | pdb_00006vf9

6VFA | pdb_00006vfa

6VFB | pdb_00006vfb

6VFC | pdb_00006vfc

7KSS | pdb_00007kss

7KST | pdb_00007kst

7KSU | pdb_00007ksu

7KSV | pdb_00007ksv

7KSW | pdb_00007ksw

7KSX | pdb_00007ksx

7KSY | pdb_00007ksy

7KSZ | pdb_00007ksz

7KT0 | pdb_00007kt0

7KT1 | pdb_00007kt1