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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Reinberg, D."

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Search Summary

This query matches 71 Structures.

Refinements

Structure Determination Methodology

experimental (71)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (20)
	Escherichia coli K-12 (16)
	Escherichia coli (14)
	Thermus thermophilus (10)
	Aquifex aeolicus VF5 (4)
	Homo sapiens (3)
	Aquifex aeolicus (2)
	Deinococcus radiodurans (2)
	Geobacillus stearothermophilus (2)
	synthetic construct (2)

More...

Taxonomy

	Bacteria (67)
	Eukaryota (3)
	other sequences (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (35)
	ELECTRON MICROSCOPY (32)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (71)
	RNA (38)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (13)
	2.5 - 3.0 (17)
	3.0 - 3.5 (8)
	3.5 - 4.0 (7)
	4.0 - 4.5 (1)
	> 4.5 (11)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (29)
	2010 - 2014 (2)
	2015 - 2019 (9)
	2020 - 2024 (25)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (6)

Symmetry Type

	Asymmetric (64)
	Cyclic (8)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (22)
	All alpha proteins (4)
	Alpha and beta proteins (a/b) (7)
	All beta proteins (2)
	Peptides (2)
	Small proteins (2)
	Artifacts (1)
	Low resolution protein structures (1)

AllSelected

1 to 25 of 71 Structures

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1UFK	Download File View File

Crystal structure of TT0836

Kaminishi, T., Sakai, H., Takemoto-Hori, C., Terada, T., Nakagawa, N., Maoka, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	TT0836 protein (protein)

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1UFL	Download File View File

Crystal Structure of TT1020 from Thermus thermophilus HB8

Wang, H., Sakai, H., Hori-Takemoto, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Struct Biol 149: 99-110

Released	2003-11-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Nitrogen regulatory protein P-II (protein)

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1V3R	Download File View File

Crystal structure of TT1020 from Thermus thermophilus HB8

Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Yamaguchi, H., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Struct Biol 149: 99-110

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Nitrogen regulatory protein P-II (protein)

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1V3S	Download File View File

Crystal structure of TT1020 from Thermus thermophilus HB8

Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Struct Biol 149: 99-110

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Nitrogen regulatory protein P-II (protein)
Unique Ligands	ATP

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1V9O	Download File View File

Crystal structure of TT1020 from Thermus thermophilus HB8

Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Struct Biol 149: 99-110

Released	2005-01-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	NITROGEN REGULATORY PROTEIN PII (protein)
Unique Ligands	ADP

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1VFJ	Download File View File

Crystal structure of TT1020 from Thermus thermophilus HB8

Wang, H., Sakai, H., Takemoto-Hori, C., Kaminishi, T., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Struct Biol 149: 99-110

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus
Macromolecule	nitrogen regulatory protein p-II (protein)

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1WF3	Download File View File

Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8

Kawazoe, M., Hori-Takemoto, C., Kaminishi, T., Sekine, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-11-25
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Thermus thermophilus HB8
Macromolecule	GTP-binding protein (protein)
Unique Ligands	GNP, GOL, MG

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1WK4	Download File View File

Crystal structure of ttk003001606

Kaminishi, T., Sakai, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-11-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ttk003001606 (protein)
Unique Ligands	MES

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1X18	Download File View File

Contact sites of ERA GTPase on the THERMUS THERMOPHILUS 30S SUBUNIT

Sharma, M.R., Barat, C., Agrawal, R.K.

(2005) Mol Cell 18: 319-329

Released	2005-05-17
Method	ELECTRON MICROSCOPY 13.5 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 4

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1X1L	Download File View File

Interaction of ERA,a GTPase protein, with the 3'minor domain of the 16S rRNA within the THERMUS THERMOPHILUS 30S subunit.

Sharma, M.R., Barat, C., Agrawal, R.K.

(2005) Mol Cell 18: 319-329

Released	2005-05-17
Method	ELECTRON MICROSCOPY 13.5 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	GTP-binding protein era (protein) RNA (130-MER) (nucleic acid)

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1Z54	Download File View File

Crystal structure of a hypothetical protein TT1821 from Thermus thermophilus

Ihsanawati, Kaminishi, T., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-09-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	probable thioesterase (protein)
Unique Ligands	GOL

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2CXH	Download File View File

Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1

Kawazoe, M., Takemoto, C., Hanawa-Suetsugu, K., Kaminishi, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-12-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aeropyrum pernix K1
Macromolecule	Probable brix-domain ribosomal biogenesis protein (protein)

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2CY2	Download File View File

Crystal structure of TTHA1209 in complex with acetyl coenzyme A

Kaminishi, T., Takemoto, C., Uchikubo-Kamo, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	probable acetyltransferase (protein)
Unique Ligands	ACO

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2DOG	Download File View File

Solution structure of the N-terminal domain of RimM from Thermus thermophilus HB8

Suzuki, S., Matsumoto, E., Tatsuguchi, A., Kawazoe, M., Kaminishi, T., Takemoto, C., Shirouzu, M., Muto, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) J Bacteriol 189: 6397-6406

Released	2007-04-17
Method	SOLUTION NMR
Organisms	Thermus thermophilus HB8
Macromolecule	Probable 16S rRNA-processing protein rimM (protein)

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2DYI	Download File View File

Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8

Kawazoe, M., Takemoto, C., Kaminishi, T., Tatsuguchi, A., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-03-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Probable 16S rRNA-processing protein rimM (protein)

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2DYJ	Download File View File

Crystal structure of ribosome-binding factor A from Thermus thermophilus HB8

Kawazoe, M., Takemoto, C., Nakayama-Ushikoshi, R., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Mol Cell 28: 434-445

Released	2007-03-14
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Ribosome-binding factor A (protein)

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2DYL	Download File View File

Crystal structure of human mitogen-activated protein kinase kinase 7 activated mutant (S287D, T291D)

Kukimoto-Niino, M., Takagi, T., Kaminishi, T., Uchikubo-Kamo, T., Terada, T., Matsuzaki, O., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-28
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 7 (protein)

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2E5L	Download File View File

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Kaminishi, T., Wilson, D.N., Takemoto, C., Harms, J.M., Kawazoe, M., Schluenzen, F., Hanawa-Suetsugu, K., Shirouzu, M., Fucini, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Structure 15: 289-297

Released	2007-05-15
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus synthetic construct
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 2
Unique Ligands	ZN

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2HHH	Download File View File

Crystal structure of kasugamycin bound to the 30S ribosomal subunit

Schluenzen, F.

(2006) Nat Struct Mol Biol 13: 871-878

Released	2006-09-26
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	KSG

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2KHE	Download File View File

Solution Structure of the Bacterial Toxin Rele from Thermus Thermophilus HB8

Suzuki, S., Kawazoe, M., Kaminishi, T., Takemoto, C., Muto, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2010-03-31
Method	SOLUTION NMR
Organisms	Thermus thermophilus HB8
Macromolecule	Toxin-like protein (protein)

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2PA2	Download File View File

Crystal structure of human Ribosomal protein L10 core domain

Nishimura, M., Kaminishi, T., Takemoto, C., Kawazoe, M., Yoshida, T., Tanaka, A., Sugano, S., Shirouzu, M., Ohkubo, T., Yokoyama, S., Kobayashi, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Mol Biol 377: 421-430

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	60S ribosomal protein L10 (protein)
Unique Ligands	K

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2R1C	Download File View File

Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex

Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.

(2007) Mol Cell 28: 434-445

Released	2008-03-18
Method	ELECTRON MICROSCOPY 12.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Ribosome-binding factor A (protein)

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2R1G	Download File View File

Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex

Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.

(2007) Mol Cell 28: 434-445

Released	2008-03-18
Method	ELECTRON MICROSCOPY 12.5 Å
Organisms	Thermus thermophilus HB27 synthetic construct
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 7

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2YV5	Download File View File

Crystal structure of Yjeq from Aquifex aeolicus

Wang, H., Kaminishi, T., Hanawa-Suetsugu, K., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex aeolicus
Macromolecule	YjeQ protein (protein)
Unique Ligands	CL, GDP, ZN

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2YWE	Download File View File

Crystal structure of LepA from Aquifex aeolicus

Kawazoe, M., Takemoto, C., Kaminishi, T., Nishino, A., Nakayama-Ushikoshi, R., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	GTP-binding protein lepA (protein)

1 to 25 of 71 Structures

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