RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Piton, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (9)
	Bacillus subtilis subsp. subtilis str. 168 (7)
	Mycobacterium tuberculosis (2)
	Thermus thermophilus HB27 (2)
	Staphylococcus aureus (1)
	Weissella viridescens (1)

Taxonomy

Bacteria (21)

Experimental Method

	X-RAY DIFFRACTION (19)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (21)
	RNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.0 - 3.5 (5)

Release Date

	2010 - 2014 (12)
	2015 - 2019 (8)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (7)
	Isomerases (4)
	Oxidoreductases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (7)

SCOP Classification

	Multi-domain proteins (alpha and beta) (3)
	All beta proteins (1)

AllSelected

1 to 21 of 21 Structures

Page 1 of 1

Sort by

Explore in 3D

3GKR \| pdb_00003gkr	Download File View File

Crystal Structure of Weissella viridescens FemX:UDP-MurNAc-hexapeptide complex

Delfosse, V., Piton, J., Villet, R., Lecerf, M., Arthur, M., Mayer, C.

To be published

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Staphylococcus aureus Weissella viridescens
Macromolecule	FemX (protein) UDP-MurNAc-peptide (protein)
Unique Ligands	ALA, GOL, MG

Explore in 3D

3IFZ \| pdb_00003ifz	Download File View File

crystal structure of the first part of the Mycobacterium tuberculosis DNA gyrase reaction core: the breakage and reunion domain at 2.7 A resolution

Piton, J., Aubry, A., Delarue, M., Mayer, C.

(2010) PLoS One 5: e12245-e12245

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA gyrase subunit A (protein)
Unique Ligands	MPD, NA

Explore in 3D

3IG0 \| pdb_00003ig0	Download File View File

crystal structure of the second part of the Mycobacterium tuberculosis DNA gyrase reaction core: the TOPRIM domain at 2.1 A resolution

Piton, J., Aubry, A., Delarue, M., Mayer, C.

(2010) PLoS One 5: e12245-e12245

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA gyrase subunit B (protein)

Explore in 3D

3M4I \| pdb_00003m4i	Download File View File

Crystal structure of the second part of the Mycobacterium tuberculosis DNA gyrase reaction core: the TOPRIM domain at 1.95 A resolution

Piton, J., Petrella, S., Aubry, A., Mayer, C.

(2010) PLoS One 5: e12245-e12245

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	DNA gyrase subunit B (protein)
Unique Ligands	MPD

Explore in 3D

3T3N \| pdb_00003t3n	Download File View File

Molecular basis for the recognition and cleavage of RNA (UUCCGU) by the bifunctional 5'-3' exo/endoribonuclease RNase J

Dorleans, A., Li de la Sierra-Gallay, I., Piton, J., Zig, L., Gilet, L., Putzer, H., Condon, C.

(2011) Structure 19: 1252-1261

Released	2011-10-19
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Thermus thermophilus HB27
Macromolecule	Metal dependent hydrolase (protein) O2'methyl-RNA (nucleic acid)
Unique Ligands	ZN

Explore in 3D

3T3O \| pdb_00003t3o	Download File View File

Molecular basis for the recognition and cleavage of RNA (CUGG) by the bifunctional 5'-3' exo/endoribonuclease RNase J

Dorleans, A., Li de la Sierra-Gallay, I., Piton, J., Zig, L., Gilet, L., Putzer, H., Condon, C.

(2011) Structure 19: 1252-1261

Released	2011-10-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus HB27
Macromolecule	Metal dependent hydrolase (protein) O2'methyl-RNA (nucleic acid)
Unique Ligands	GOL, ZN

Explore in 3D

4G3N \| pdb_00004g3n	Download File View File

Mycobacterium tuberculosis gyrase type IIA topoisomerase C-terminal domain at 1.4 A resolution

Darmon, A., Piton, J., Petrella, S., Aubry, A., Mayer, C.

(2013) Biochem J 455: 285-294

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA gyrase subunit A (protein)

Explore in 3D

4GCW \| pdb_00004gcw	Download File View File

Crystal structure of RNase Z in complex with precursor tRNA(Thr)

Pellegrini, O., Li de la Sierra-Gallay, I., Piton, J., Gilet, L., Condon, C.

(2012) Structure 20: 1769-1777

Released	2012-10-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Ribonuclease Z (protein) TRNA(THR) (nucleic acid)
Unique Ligands	MES, ZN

Explore in 3D

4JZS \| pdb_00004jzs	Download File View File

Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH (E68A mutant)

Piton, J., Larue, V., Thillier, Y., Dorleans, A., Pellegrini, O., Li de la Sierra-Gallay, I., Vasseur, J.J., Debart, F., Tisne, C., Condon, C.

(2013) Proc Natl Acad Sci U S A 110: 8858-8863

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	dGTP pyrophosphohydrolase (protein)
Unique Ligands	EPE

Explore in 3D

4JZT \| pdb_00004jzt	Download File View File

Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH (E68A mutant) bound to GTP

Piton, J., Larue, V., Thillier, Y., Dorleans, A., Pellegrini, O., Li de la Sierra-Gallay, I., Vasseur, J.J., Debart, F., Tisne, C., Condon, C.

(2013) Proc Natl Acad Sci U S A 110: 8858-8863

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	dGTP pyrophosphohydrolase (protein)
Unique Ligands	GTP

Explore in 3D

4JZU \| pdb_00004jzu	Download File View File

Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pGpG) - first guanosine residue in guanosine binding pocket

Piton, J., Larue, V., Thillier, Y., Dorleans, A., Pellegrini, O., Li de la Sierra-Gallay, I., Vasseur, J.J., Debart, F., Tisne, C., Condon, C.

(2013) Proc Natl Acad Sci U S A 110: 8858-8863

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	RNA PYROPHOSPHOHYDROLASE (protein) RNA (5'-R((GCP)PG)-3') (nucleic acid)
Unique Ligands	EPE

Explore in 3D

4JZV \| pdb_00004jzv	Download File View File

Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pGpG) - second guanosine residue in guanosine binding pocket

Piton, J., Larue, V., Thillier, Y., Dorleans, A., Pellegrini, O., Li de la Sierra-Gallay, I., Vasseur, J.J., Debart, F., Tisne, C., Condon, C.

(2013) Proc Natl Acad Sci U S A 110: 8858-8863

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	RNA PYROPHOSPHOHYDROLASE (protein) RNA (5'-R((GCP)PG)-3') (nucleic acid)
Unique Ligands	EPE, MG

Explore in 3D

4XWP \| pdb_00004xwp	Download File View File

Structure of PE-PPE domains of ESX-1 secreted protein EspB, C2221 in presence of Ca

Korotkov, K.V.

(2015) J Struct Biol 191: 236-244

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ESX-1 secretion-associated protein EspB (protein)
Unique Ligands	CA

Explore in 3D

4XXN \| pdb_00004xxn	Download File View File

Structure of PE-PPE domains of ESX-1 secreted protein EspB, I222

Korotkov, K.V.

(2015) J Struct Biol 191: 236-244

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ESX-1 secretion-associated protein EspB (protein)
Unique Ligands	CL, NA

Explore in 3D

4XXX \| pdb_00004xxx	Download File View File

Structure of PE-PPE domains of ESX-1 secreted protein EspB, C2221

Piton, J., Pojer, F., Korotkov, K.V.

(2015) J Struct Biol 191: 236-244

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ESX-1 secretion-associated protein EspB (protein)
Unique Ligands	CL, GOL

Explore in 3D

4XY3 \| pdb_00004xy3	Download File View File

Structure of ESX-1 secreted protein EspB

Wagner, J.M., Korotkov, K.V.

(2015) J Struct Biol 191: 236-244

Released	2015-02-18
Method	X-RAY DIFFRACTION 3.04 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ESX-1 secretion-associated protein EspB (protein)

Explore in 3D

5MQ8 \| pdb_00005mq8	Download File View File

Crystal structure of Rae1 (YacP) from Bacillus subtilis

Piton, J., Gilet, L., Pellegrini, O., Leroy, M., Figaro, S., Condon, C.

(2017) EMBO J 36: 1167-1181

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Uncharacterized protein YacP (protein)
Unique Ligands	GOL

Explore in 3D

5MQ9 \| pdb_00005mq9	Download File View File

Crystal structure of Rae1 (YacP) from Bacillus subtilis (W164L mutant)

Piton, J., Gilet, L., Pellegrini, O., Leroy, M., Figaro, S., Condon, C.

(2017) EMBO J 36: 1167-1181

Released	2017-04-19
Method	X-RAY DIFFRACTION 3.174 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Uncharacterized protein YacP (protein)
Unique Ligands	SO4

Explore in 3D

6G83 \| pdb_00006g83	Download File View File

Crystal structure of M. tuberculosis DprE1 in complex with sPBTZ169 (sulfonylPBTZ)

Piton, J., Makarov, V., Cole, S.T.

(2018) Antimicrob Agents Chemother 62:

Released	2018-08-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Decaprenylphosphoryl-beta-D-ribose oxidase (protein)
Unique Ligands	EQ8, FAD

Explore in 3D

6TOB \| pdb_00006tob	Download File View File

Structural and DNA Binding Properties of Mycobacterial Integration Host Factor mIHF

Herrmann, T.

(2020) J Struct Biol 209: 107434-107434

Released	2019-12-25
Method	SOLUTION NMR
Organisms	Mycobacterium tuberculosis
Macromolecule	Integration host factor MIHF (protein)

Explore in 3D

6XZC \| pdb_00006xzc	Download File View File

CryoEM structure of the ring-shaped virulence factor EspB from Mycobacterium tuberculosis

Piton, J., Pojer, F., Wakatsuki, S., Gati, C., Cole, S.T.

(2020) J Struct Biol X 4: 100029-100029

Released	2020-06-17
Method	ELECTRON MICROSCOPY 3.37 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ESX-1 secretion-associated protein EspB (protein)

1 to 21 of 21 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3GKR | pdb_00003gkr

3IFZ | pdb_00003ifz

3IG0 | pdb_00003ig0

3M4I | pdb_00003m4i

3T3N | pdb_00003t3n

3T3O | pdb_00003t3o

4G3N | pdb_00004g3n

4GCW | pdb_00004gcw

4JZS | pdb_00004jzs

4JZT | pdb_00004jzt

4JZU | pdb_00004jzu

4JZV | pdb_00004jzv

4XWP | pdb_00004xwp

4XXN | pdb_00004xxn

4XXX | pdb_00004xxx

4XY3 | pdb_00004xy3

5MQ8 | pdb_00005mq8

5MQ9 | pdb_00005mq9

6G83 | pdb_00006g83

6TOB | pdb_00006tob

6XZC | pdb_00006xzc