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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Peralta, C."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (10)
	Clostridioides difficile (4)
	synthetic construct (3)

Taxonomy

	Eukaryota (10)
	Bacteria (4)
	other sequences (3)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	Protein (14)
	DNA (6)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (4)
	3.5 - 4.0 (3)
	4.0 - 4.5 (5)

Release Date

2020 - 2024 (14)

Enzyme Classification Name

Transferases (6)

Membrane Protein Annotation

	mpstruc (4)
	OPM (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (2)
	Dihedral (1)

AllSelected

1 to 14 of 14 Structures

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6UWI \| pdb_00006uwi	Download File View File

Crystal structure of the Clostridium difficile translocase CDTb

Pozharski, E.

(2020) Proc Natl Acad Sci U S A 117: 1049-1058

Released	2020-01-22
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Clostridioides difficile
Macromolecule	ADP-ribosyltransferase binding component (protein)
Unique Ligands	CA

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6UWO \| pdb_00006uwo	Download File View File

Crystal structure of receptor binding domain 2 from Clostridium difficile translocase CDTb

Pozharski, E.

(2020) Proc Natl Acad Sci U S A 117: 1049-1058

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridioides difficile
Macromolecule	ADP-ribosyltransferase binding component (protein)

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6UWR \| pdb_00006uwr	Download File View File

Clostridium difficile binary toxin translocase CDTb in asymmetric tetradecamer conformation

Xu, X., Pozharski, E., des Georges, A.

(2020) Proc Natl Acad Sci U S A 117: 1049-1058

Released	2020-01-22
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Clostridioides difficile
Macromolecule	ADP-ribosyltransferase binding component (protein)
Unique Ligands	CA

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6UWT \| pdb_00006uwt	Download File View File

Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation

Xu, X., Pozharski, E., des Georges, A.

(2020) Proc Natl Acad Sci U S A 117: 1049-1058

Released	2020-01-22
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Clostridioides difficile
Macromolecule	ADP-ribosyltransferase binding component (protein)
Unique Ligands	CA

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6VAA \| pdb_00006vaa	Download File View File

Structure of the Fanconi Anemia ID complex bound to ICL DNA

Pavletich, N.P.

(2020) Nature 580: 278-282

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 2 Unique nucleic acid chains: 4

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6VAD \| pdb_00006vad	Download File View File

Fanconi Anemia ID complex

Pavletich, N.P.

(2020) Nature 580: 278-282

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Fanconi anemia group D2 protein (protein) Fanconi anemia, complementation group I (protein)

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6VAE \| pdb_00006vae	Download File View File

Mono-ubiquitinated Fanconi Anemia ID complex bound to ICL DNA

Pavletich, N.P.

(2020) Nature 580: 278-282

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Fanconi anemia group D2 protein (protein) Fanconi anemia, complementation group I (protein) Ubiquitin (protein) DNA (29-MER) (nucleic acid)

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6VAF \| pdb_00006vaf	Download File View File

Structure of mono-ubiquitinated FANCD2 bound to non-ubiquitinated FANCI and to DNA

Pavletich, N.P.

(2020) Nature 580: 278-282

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Fanconi anemia group D2 protein (protein) Fanconi anemia, complementation group I (protein) Ubiquitin (protein) DNA (29-MER) (nucleic acid)

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7KZP \| pdb_00007kzp	Download File View File

Structure of the human Fanconi anaemia Core complex

Wang, S.L., Pavletich, N.P.

(2021) Nat Struct Mol Biol 28: 300-309

Released	2021-03-10
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9
Unique Ligands	ZN

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7KZQ \| pdb_00007kzq	Download File View File

Structure of the human Fanconi anaemia Core-ID complex

Wang, S.L., Pavletich, N.P.

(2021) Nat Struct Mol Biol 28: 300-309

Released	2021-03-10
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 11
Unique Ligands	ZN

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7KZR \| pdb_00007kzr	Download File View File

Structure of the human Fanconi Anaemia Core-UBE2T-ID complex

Wang, S.L., Pavletich, N.P.

(2021) Nat Struct Mol Biol 28: 300-309

Released	2021-03-10
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 12
Unique Ligands	ZN

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7KZS \| pdb_00007kzs	Download File View File

Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in open state

Wang, S.L., Pavletich, N.P.

(2021) Nat Struct Mol Biol 28: 300-309

Released	2021-03-10
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 2
Unique Ligands	ZN

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7KZT \| pdb_00007kzt	Download File View File

Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in intermediate state

Wang, S.L., Pavletich, N.P.

(2021) Nat Struct Mol Biol 28: 300-309

Released	2021-03-10
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 2
Unique Ligands	ZN

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7KZV \| pdb_00007kzv	Download File View File

Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in closed state

Wang, S.L., Pavletich, N.P.

(2021) Nat Struct Mol Biol 28: 300-309

Released	2021-03-10
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 2
Unique Ligands	ZN

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6UWI | pdb_00006uwi

Crystal structure of the Clostridium difficile translocase CDTb

6UWO | pdb_00006uwo

Crystal structure of receptor binding domain 2 from Clostridium difficile translocase CDTb

6UWR | pdb_00006uwr

Clostridium difficile binary toxin translocase CDTb in asymmetric tetradecamer conformation

6UWT | pdb_00006uwt

Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation

6VAA | pdb_00006vaa

Structure of the Fanconi Anemia ID complex bound to ICL DNA

6VAD | pdb_00006vad

Fanconi Anemia ID complex

6VAE | pdb_00006vae

Mono-ubiquitinated Fanconi Anemia ID complex bound to ICL DNA

6VAF | pdb_00006vaf

Structure of mono-ubiquitinated FANCD2 bound to non-ubiquitinated FANCI and to DNA

7KZP | pdb_00007kzp

Structure of the human Fanconi anaemia Core complex

7KZQ | pdb_00007kzq

Structure of the human Fanconi anaemia Core-ID complex

7KZR | pdb_00007kzr

Structure of the human Fanconi Anaemia Core-UBE2T-ID complex

7KZS | pdb_00007kzs

Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in open state

7KZT | pdb_00007kzt

Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in intermediate state

7KZV | pdb_00007kzv

Structure of the human fanconi anaemia Core-UBE2T-ID-DNA complex in closed state

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

6UWI | pdb_00006uwi

6UWO | pdb_00006uwo

6UWR | pdb_00006uwr

6UWT | pdb_00006uwt

6VAA | pdb_00006vaa

6VAD | pdb_00006vad

6VAE | pdb_00006vae

6VAF | pdb_00006vaf

7KZP | pdb_00007kzp

7KZQ | pdb_00007kzq

7KZR | pdb_00007kzr

7KZS | pdb_00007kzs

7KZT | pdb_00007kzt

7KZV | pdb_00007kzv