RCSB PDB: Search

7JV2 \| pdb_00007jv2	Download File View File

SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)

Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S2H13 Fab heavy chain (protein) S2H13 Fab light chain (protein) Spike glycoprotein (protein)

Explore in 3D

7JV4 \| pdb_00007jv4	Download File View File

SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)

Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S2H13 Fab heavy chain (protein) S2H13 Fab light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7JV6 \| pdb_00007jv6	Download File View File

SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)

Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S2H13 Fab heavy chain (protein) S2H13 Fab light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

7JVA \| pdb_00007jva	Download File View File

SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)

Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S2A4 Fab heavy chain (protein) S2A4 Fab light chain (protein) Spike glycoprotein (protein)
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7JVC \| pdb_00007jvc	Download File View File

SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment

Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S2A4 Fab heavy chain (protein) S2A4 Fab light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7JW0 \| pdb_00007jw0	Download File View File

SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment

Walls, A.C., Park, Y.J., Tortorici, M.A., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S304 Fab heavy chain (protein) S304 Fab light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

7JX3 \| pdb_00007jx3	Download File View File

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

Snell, G., Czudnochowski, N., Rosen, L.E., Nix, J.C., Corti, D., Veesler, D., Park, Y.J., Walls, A.C., Tortorici, M.A., Cameroni, E., Pinto, D., Beltramello, M., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG

Explore in 3D

7JXC \| pdb_00007jxc	Download File View File

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Homo sapiens
Macromolecule	S2H14 antigen-binding (Fab) fragment (protein)
Unique Ligands	2PE

Explore in 3D

7JXD \| pdb_00007jxd	Download File View File

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	S2A4 antigen-binding (Fab) fragment (protein)

Explore in 3D

7JXE \| pdb_00007jxe	Download File View File

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

Tortorici, M.A., Park, Y.J., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D.

(2020) Cell 183: 1024-1042.e21

Released	2020-10-14
Method	X-RAY DIFFRACTION 2.043 Å
Organisms	Homo sapiens
Macromolecule	S2X35 antigen-binding (Fab) fragment (protein)

Explore in 3D

7N8H \| pdb_00007n8h	Download File View File

SARS-CoV-2 S (B.1.429 / epsilon variant) + S2M11 + S2L20 Global Refinement

McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2021) Science 373: 648-654

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S2L20 Fab Heavy Chain variable region (protein) S2L20 Fab Light Chain variable region (protein) S2M11 Fab Heavy Chain variable region (protein) S2M11 Fab Light Chain variable region (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

Explore in 3D

7N8I \| pdb_00007n8i	Download File View File

SARS-CoV-2 S (B.1.429 / epsilon variant) + S2M11 + S2L20 (Local Refinement of the NTD/S2L20)

McCallum, M., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.

(2021) Science 373: 648-654

Released	2021-07-14
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S2L20 Fab Heavy Chain Variable Region (protein) S2L20 Fab Light Chain Variable Region (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

7JV2 | pdb_00007jv2

SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)

7JV4 | pdb_00007jv4

SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)

7JV6 | pdb_00007jv6

SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)

7JVA | pdb_00007jva

SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)

7JVC | pdb_00007jvc

SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment

7JW0 | pdb_00007jw0

SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment

7JX3 | pdb_00007jx3

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

7JXC | pdb_00007jxc

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

7JXD | pdb_00007jxd

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

7JXE | pdb_00007jxe

Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology

7N8H | pdb_00007n8h

SARS-CoV-2 S (B.1.429 / epsilon variant) + S2M11 + S2L20 Global Refinement

7N8I | pdb_00007n8i

SARS-CoV-2 S (B.1.429 / epsilon variant) + S2M11 + S2L20 (Local Refinement of the NTD/S2L20)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

7JV2 | pdb_00007jv2

7JV4 | pdb_00007jv4

7JV6 | pdb_00007jv6

7JVA | pdb_00007jva

7JVC | pdb_00007jvc

7JW0 | pdb_00007jw0

7JX3 | pdb_00007jx3

7JXC | pdb_00007jxc

7JXD | pdb_00007jxd

7JXE | pdb_00007jxe

7N8H | pdb_00007n8h

7N8I | pdb_00007n8i