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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Park, H.M."

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Search Summary

This query matches 60 Structures.

Refinements

Structure Determination Methodology

experimental (60)

Scientific Name of Source Organism

	Homo sapiens (14)
	Escherichia coli K-12 (13)
	Escherichia coli (11)
	Thermus thermophilus HB8 (8)
	Escherichia coli O157:H7 (6)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (6)
	Escherichia coli str. K-12 substr. MC4100 (3)
	Gallus gallus (3)
	Staphylococcus aureus (3)
	Pseudomonas aeruginosa PAO1 (2)

More...

Taxonomy

	Bacteria (43)
	Eukaryota (17)
	Eukaryota (eukaryotes) (1)

Experimental Method

	SOLUTION NMR (51)
	X-RAY DIFFRACTION (7)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (60)
	DNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (3)
	2010 - 2014 (14)
	2015 - 2019 (26)
	2020 - 2024 (15)

Enzyme Classification Name

	Hydrolases (18)
	Transferases (9)
	Isomerases (5)
	Translocases (2)

Symmetry Type

	Asymmetric (50)
	Cyclic (12)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	All alpha proteins (8)
	All beta proteins (2)

AllSelected

1 to 25 of 60 Structures

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1L1M \| pdb_00001l1m	Download File View File

SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1

Kalodimos, C.G., Bonvin, A.M.J.J., Salinas, R.K., Wechselberger, R., Boelens, R., Kaptein, R.

(2002) EMBO J 21: 2866-2876

Released	2002-06-26
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Lactose operon repressor (protein) 5'-D(APAPAPTPTPGPTPTPAPTPCPCPGPCPTPCPAPCPAPAPTPTPC)-3' (nucleic acid) 5'-D(GPAPAPTPTPGPTPGPAPGPCPGPGPAPTPAPAPCPAPAPTPTPT)-3' (nucleic acid)

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1OSL \| pdb_00001osl	Download File View File

Solution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequence

Kalodimos, C.G., Bonvin, A.M.J.J., Boelens, R., Kaptein, R.

(2004) Science 305: 386-389

Released	2004-05-04
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Lactose operon repressor (protein) 5'-D(CPGPAPTPAPAPGPAPTPAPTPCPTPTPAPTPCPG)-3' (nucleic acid)

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2BJC \| pdb_00002bjc	Download File View File

NMR structure of a protein-DNA complex of an altered specificity mutant of the lac repressor headpiece that mimics the gal repressor

Salinas, R.K., Folkers, G.E., Bonvin, A.M.J.J., Das, D., Boelens, R., Kaptein, R.

(2005) Chembiochem 6: 1628

Released	2005-10-18
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	LACTOSE OPERON REPRESSOR (protein) 5'-D(GPAPAPTPTPGPTPAPAPGP CPGPCPTPTPAPCPAPAPTPTPC)-3' (nucleic acid)

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2L3P \| pdb_00002l3p	Download File View File

Structure of the prolyl cis isomer of the Crk Protein

Kalodimos, C.G., Sarkar, P., Saleh, T., Tzeng, S.R., Birge, R.

(2011) Nat Chem Biol 7: 51-57

Released	2010-12-08
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	Cis isomer of Crk protein (protein)

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2L3Q \| pdb_00002l3q	Download File View File

Structure of the prolyl trans isomer of the Crk Protein

Kalodimos, C., Sarkar, P., Saleh, T., Tzeng, S., Birge, R.

(2011) Nat Chem Biol 7: 51-57

Released	2010-12-08
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	Trans isomer of Crk protein (protein)

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2L3S \| pdb_00002l3s	Download File View File

Structure of the autoinhibited Crk

Kalodimos, C.G., Sarkar, P., Saleh, T., Tzeng, S.R., Birge, R.

(2011) Nat Chem Biol 7: 51-57

Released	2010-12-08
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	Autoinhibited Crk protein (protein)

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2LHK \| pdb_00002lhk	Download File View File

Structural analysis of a chaperone in type III secretion system

Chen, L., Economou, A., Kalodimos, C.G.

(2011) Mol Cell 44: 734-744

Released	2011-12-28
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	L0052 (protein)

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2LQN \| pdb_00002lqn	Download File View File

Solution structure of CRKL

Jankowski, W., Saleh, T., Kalodimos, C.

(2012) Nat Chem Biol 8: 590-596

Released	2012-05-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Crk-like protein (protein)

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2LQW \| pdb_00002lqw	Download File View File

Solution structure of phosphorylated CRKL

Jankowski, W., Saleh, T., Kalodimos, C.

(2012) Nat Chem Biol 8: 590-596

Released	2012-05-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Crk-like protein (protein)

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2M1N \| pdb_00002m1n	Download File View File

Solution structure of a chaperone in type III secretion system

Chen, L., Economou, A., Kalodimos, C.

(2013) Cell Rep 3: 709-715

Released	2013-04-10
Method	SOLUTION NMR
Organisms	Escherichia coli 3003
Macromolecule	Type III secretion system filament chaperone CesA (protein)

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2MLX \| pdb_00002mlx	Download File View File

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA220-310

Saio, T., Guan, X., Rossi, P., Economou, A., Kalodimos, C.G.

(2014) Science 344: 1250494-1250494

Released	2014-05-21
Method	SOLUTION NMR
Organisms	Escherichia coli str. K-12 substr. MC4100
Macromolecule	Alkaline phosphatase (protein) Trigger factor (protein)

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2MLY \| pdb_00002mly	Download File View File

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA1-150

Saio, T., Guan, X., Rossi, P., Economou, A., Kalodimos, C.G.

(2014) Science 344: 1250494-1250494

Released	2014-05-21
Method	SOLUTION NMR
Organisms	Escherichia coli str. K-12 substr. MC4100
Macromolecule	Alkaline phosphatase (protein) Trigger factor (protein)

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2MLZ \| pdb_00002mlz	Download File View File

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA365-471

Saio, T., Guan, X., Rossi, P., Economou, A., Kalodimos, C.G.

(2014) Science 344: 1250494-1250494

Released	2014-05-21
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli str. K-12 substr. MC4100
Macromolecule	Alkaline phosphatase (protein) Trigger factor (protein)

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2MS4 \| pdb_00002ms4	Download File View File

Cyclophilin a complexed with a fragment of crk-ii

Jankowski, W., Saleh, T., Rossi, P., Kalodimos, C.

(2016) Nat Chem Biol 12: 117-123

Released	2015-09-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptide (protein) Peptidyl-prolyl cis-trans isomerase A (protein)

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2VDA \| pdb_00002vda	Download File View File

Solution structure of the SecA-signal peptide complex

Gelis, I., Bonvin, A.M.J.J., Keramisanou, D., Koukaki, M., Gouridis, G., Karamanou, S., Economou, A., Kalodimos, C.G.

(2007) Cell 131: 756

Released	2007-11-27
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	MALTOPORIN (protein) TRANSLOCASE SUBUNIT SECA (protein)

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2WC2 \| pdb_00002wc2	Download File View File

Nmr structure of catabolite activator protein in the unliganded state

Popovych, N., Tzeng, S.R., Kalodimos, C.G.

(2009) Proc Natl Acad Sci U S A 106: 6927

Released	2009-04-21
Method	SOLUTION NMR
Organisms	Escherichia coli BL21(DE3)
Macromolecule	CATABOLITE GENE ACTIVATOR (protein)

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4BH9 \| pdb_00004bh9	Download File View File

A structural model of CAP mutant (T127L and S128I) in the apo state

Tzeng, S.R., Kalodimos, C.G.

(2013) Nat Chem Biol 9: 462-465

Released	2013-05-08
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	cAMP-activated global transcriptional regulator CRP (protein)

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4BHP \| pdb_00004bhp	Download File View File

A structural model of CAP mutant (T127L and S128I) in cGMP-bound state

Tzeng, S.R., Kalodimos, C.G.

(2013) Nat Chem Biol 9: 462

Released	2013-05-08
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	CAMP RECEPTOR PROTEIN (protein)

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4J8T \| pdb_00004j8t	Download File View File

Engineered Digoxigenin binder DIG10.2

Stoddard, B.L., Doyle, L.A.

(2013) Nature 501: 212-216

Released	2013-06-26
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Engineered Digoxigenin binder protein DIG10.2 (protein)
Unique Ligands	DOG

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4J9A \| pdb_00004j9a	Download File View File

Engineered Digoxigenin binder DIG10.3

Stoddard, B.L., Doyle, L.A.

(2013) Nature 501: 212-216

Released	2013-06-26
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Engineered Digoxigenin binder protein DIG10.3 (protein)
Unique Ligands	DOG

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5JTL \| pdb_00005jtl	Download File View File

The structure of chaperone SecB in complex with unstructured proPhoA

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

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5JTM \| pdb_00005jtm	Download File View File

The structure of chaperone SecB in complex with unstructured PhoA binding site a

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli 55989 Escherichia coli K-12
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

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5JTN \| pdb_00005jtn	Download File View File

The structure of chaperone SecB in complex with unstructured proPhoA binding site c

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

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5JTO \| pdb_00005jto	Download File View File

The structure of chaperone SecB in complex with unstructured proPhoA binding site d

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

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5JTP \| pdb_00005jtp	Download File View File

The structure of chaperone SecB in complex with unstructured proPhoA binding site e

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

1 to 25 of 60 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1L1M | pdb_00001l1m

1OSL | pdb_00001osl

2BJC | pdb_00002bjc

2L3P | pdb_00002l3p

2L3Q | pdb_00002l3q

2L3S | pdb_00002l3s

2LHK | pdb_00002lhk

2LQN | pdb_00002lqn

2LQW | pdb_00002lqw

2M1N | pdb_00002m1n

2MLX | pdb_00002mlx

2MLY | pdb_00002mly

2MLZ | pdb_00002mlz

2MS4 | pdb_00002ms4

2VDA | pdb_00002vda

2WC2 | pdb_00002wc2

4BH9 | pdb_00004bh9

4BHP | pdb_00004bhp

4J8T | pdb_00004j8t

4J9A | pdb_00004j9a

5JTL | pdb_00005jtl

5JTM | pdb_00005jtm

5JTN | pdb_00005jtn

5JTO | pdb_00005jto

5JTP | pdb_00005jtp