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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Norimatsu, Y."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

Oryctolagus cuniculus (9)

Taxonomy

Eukaryota (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (4)
	2015 - 2019 (5)

Enzyme Classification Name

	Hydrolases (9)
	Translocases (9)

Membrane Protein Annotation

	MemProtMD (9)
	PDBTM (9)
	mpstruc (5)
	OPM (3)

Symmetry Type

Asymmetric (9)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (4)
	Membrane and cell surface proteins and peptides (4)

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1 to 9 of 9 Structures

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Explore in 3D

2DQS \| pdb_00002dqs	Download File View File

Crystal structure of the calcium pump with amppcp in the absence of calcium

Toyoshima, C., Norimatsu, Y., Tsueda, J.

To be published

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	ACP, MG, NA, PTY, TG1

Explore in 3D

2ZBE \| pdb_00002zbe	Download File View File

Calcium pump crystal structure with bound BeF3 in the absence of calcium and TG

Toyoshima, C., Ogawa, H., Norimatsu, Y.

(2007) Proc Natl Acad Sci U S A 104: 19831-19836

Released	2007-12-11
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	BEF, MG

Explore in 3D

2ZBF \| pdb_00002zbf	Download File View File

Calcium pump crystal structure with bound BeF3 and TG in the absence of calcium

Toyoshima, C., Ogawa, H., Norimatsu, Y.

(2007) Proc Natl Acad Sci U S A 104: 19831-19836

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	BEF, MG, TG1

Explore in 3D

2ZBG \| pdb_00002zbg	Download File View File

Calcium pump crystal structure with bound AlF4 and TG in the absence of calcium

Toyoshima, C., Ogawa, H., Norimatsu, Y.

(2007) Proc Natl Acad Sci U S A 104: 19831-19836

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	ALF, MG, TG1

Explore in 3D

5XA7 \| pdb_00005xa7	Download File View File

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E1-2CA2+ crystals

Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.

(2017) Nature 545: 193-198

Released	2017-05-17
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	CA, NA, PCW

Explore in 3D

5XA8 \| pdb_00005xa8	Download File View File

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E1-ALF4-ADP-2CA2+ crystals

Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.

(2017) Nature 545: 193-198

Released	2017-05-17
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	ADP, ALF, CA, MG, PCW

Explore in 3D

5XA9 \| pdb_00005xa9	Download File View File

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2-ALF-(TG) crystals of C2 symmetry

Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.

(2017) Nature 545: 193-198

Released	2017-06-14
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	ALF, MG, PCW, TG1

Explore in 3D

5XAA \| pdb_00005xaa	Download File View File

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2-ALF-(TG) crystals of P21212 symmetry

Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.

(2017) Nature 545: 193-198

Released	2017-05-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	ALF, MG, PCW, TG1

Explore in 3D

5XAB \| pdb_00005xab	Download File View File

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2(TG) crystals

Norimatsu, Y., Hasegawa, K., Shimizu, N., Toyoshima, C.

(2017) Nature 545: 193-198

Released	2017-06-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (protein)
Unique Ligands	NA, PCW, TG1

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2DQS | pdb_00002dqs

Crystal structure of the calcium pump with amppcp in the absence of calcium

2ZBE | pdb_00002zbe

Calcium pump crystal structure with bound BeF3 in the absence of calcium and TG

2ZBF | pdb_00002zbf

Calcium pump crystal structure with bound BeF3 and TG in the absence of calcium

2ZBG | pdb_00002zbg

Calcium pump crystal structure with bound AlF4 and TG in the absence of calcium

5XA7 | pdb_00005xa7

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E1-2CA2+ crystals

5XA8 | pdb_00005xa8

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E1-ALF4-ADP-2CA2+ crystals

5XA9 | pdb_00005xa9

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2-ALF-(TG) crystals of C2 symmetry

5XAA | pdb_00005xaa

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2-ALF-(TG) crystals of P21212 symmetry

5XAB | pdb_00005xab

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2(TG) crystals

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2DQS | pdb_00002dqs

2ZBE | pdb_00002zbe

2ZBF | pdb_00002zbf

2ZBG | pdb_00002zbg

5XA7 | pdb_00005xa7

5XA8 | pdb_00005xa8

5XA9 | pdb_00005xa9

5XAA | pdb_00005xaa

5XAB | pdb_00005xab