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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Martin-Malpartida, P."

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Search Summary

This query matches 44 Structures.

Refinements

Structure Determination Methodology

experimental (44)

Scientific Name of Source Organism

	Homo sapiens (26)
	Mus musculus (9)
	Danio rerio (4)
	Drosophila melanogaster (2)
	synthetic construct (2)
	Epstein-Barr virus (strain B95-8) (1)
	Saccharomyces cerevisiae (1)
	Trichoplax adhaerens (1)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (42)
	other sequences (2)
	Duplodnaviria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (26)
	SOLUTION NMR (18)

Polymer Entity Type

	Protein (44)
	DNA (21)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (2)
	1.5 - 2.0 (3)
	2.0 - 2.5 (14)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (8)
	2010 - 2014 (1)
	2015 - 2019 (19)
	2020 - 2024 (16)

Enzyme Classification Name

	Transferases (7)
	Ligases (4)
	Isomerases (1)

Symmetry Type

	Asymmetric (34)
	Cyclic (10)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a/b) (1)
	Artifacts (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 44 Structures

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1YIU \| pdb_00001yiu	Download File View File

Itch E3 ubiquitin ligase WW3 domain

Shaw, A.Z., Martin-Malpartida, P., Morales, B., Yraola, F., Royo, M., Macias, M.J.

(2005) Proteins 60: 558-560

Released	2005-08-02
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Itchy E3 ubiquitin protein ligase (protein)

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2B7E \| pdb_00002b7e	Download File View File

First FF domain of Prp40 Yeast Protein

Gasch, A., Wiesner, S., Martin-Malpartida, P., Ramirez-Espain, X., Ruiz, L., Macias, M.J.

(2006) J Biological Chem 281: 356-364

Released	2005-11-01
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Pre-mRNA processing protein PRP40 (protein)

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2JO9 \| pdb_00002jo9	Download File View File

Mouse Itch 3rd WW domain complex with the Epstein-Barr virus latent membrane protein 2A derived peptide EEPPPPYED

Macias, M.J., Shaw, A.Z., Martin-Malpartida, P., Morales, B., Ruiz, L., Ramirez-Espain, X., Yraola, F., Royo, M.

(2007) Structure 15: 473-483

Released	2007-04-17
Method	SOLUTION NMR
Organisms	Epstein-Barr virus (strain B95-8) Mus musculus
Macromolecule	Itchy E3 ubiquitin protein ligase (protein) Latent membrane protein 2 (protein)

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2JOC \| pdb_00002joc	Download File View File

Mouse Itch 3rd domain phosphorylated in T30

Macias, M.J., Shaw, A.Z., Martin-Malpartida, P., Morales, B., Ruiz, L., Ramirez-Espain, X., Yraola, F., Royo, M.

(2007) Structure 15: 473-483

Released	2007-04-17
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Itchy E3 ubiquitin protein ligase (protein)

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2JUP \| pdb_00002jup	Download File View File

FBP28WW2 domain in complex with the PPLIPPPP peptide

Ramirez-Espain, X., Ruiz, L., Martin-Malpartida, P., Oschkinat, H., Macias, M.J.

(2007) J Mol Biology 373: 1255-1268

Released	2007-11-06
Method	SOLUTION NMR
Organisms	Mus musculus synthetic construct
Macromolecule	Formin-1 (protein) Transcription elongation regulator 1 (protein)

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2K85 \| pdb_00002k85	Download File View File

p190-A RhoGAP FF1 domain

Bonet, R., Ruiz, L., Martin-Malpartida, P., Macias, M.

(2009) J Mol Biology 389: 230-237

Released	2009-05-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Glucocorticoid receptor DNA-binding factor 1 (protein)

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2MPT \| pdb_00002mpt	Download File View File

WW3 domain of Nedd4L in complex with its HECT domain PY motif

Escobedo, A., Macias, M.J., Gomes, T., Aragon, E., Martin-Malpartida, P., Ruiz, L.

(2014) Structure 22: 1446-1457

Released	2014-10-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase NEDD4-like (protein)

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2N1O \| pdb_00002n1o	Download File View File

PIN1 WW domain in complex with a phosphorylated CPEB1 derived peptide

Schelhorn, C., Macias, M., Martin-Malpartida, P.

(2015) Sci Rep 5: 14990-14990

Released	2015-10-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cytoplasmic polyadenylation element-binding protein 1 (protein) Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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2N4R \| pdb_00002n4r	Download File View File

NMR structure of Fbp28 WW domain L453D mutant

Medina, J., Macias, M., Martin-Malpartida, P., Scheraga, H.A.

(2015) Proc Natl Acad Sci U S A 112: 13549-13554

Released	2015-10-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcription elongation regulator 1 (protein)

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2N4S \| pdb_00002n4s	Download File View File

NMR structure of Fbp28 WW domain L453E mutant

Medina, J., Macias, M., Martin-Malpartida, P., Scheraga, H.A.

(2015) Proc Natl Acad Sci U S A 112: 13549-13554

Released	2015-10-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcription elongation regulator 1 (protein)

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2N4T \| pdb_00002n4t	Download File View File

NMR structure of Fbp28 WW domain L453W mutant

Medina, J., Macias, M., Martin-Malpartida, P., Scheraga, H.A.

(2015) Proc Natl Acad Sci U S A 112: 13549-13554

Released	2015-10-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcription elongation regulator 1 (protein)

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2N4U \| pdb_00002n4u	Download File View File

NMR structure of Fbp28 WW domain E454Y mutant

Medina, J., Macias, M., Martin-Malpartida, P., Scheraga, H.A.

(2015) Proc Natl Acad Sci U S A 112: 13549-13554

Released	2015-10-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcription elongation regulator 1 (protein)

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2N4V \| pdb_00002n4v	Download File View File

NMR structure of Fbp28 WW domain T456D mutant

Medina, J., Macias, M., Martin-Malpartida, P., Scheraga, H.A.

(2015) Proc Natl Acad Sci U S A 112: 13549-13554

Released	2015-10-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcription elongation regulator 1 (protein)

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2N4W \| pdb_00002n4w	Download File View File

NMR structure of Fbp28 WW domain T456Y mutant

Medina, J., Macias, M., Martin-Malpartida, P., Scheraga, H.A.

(2015) Proc Natl Acad Sci U S A 112: 13549-13554

Released	2015-10-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcription elongation regulator 1 (protein)

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2RLY \| pdb_00002rly	Download File View File

FBP28WW2 domain in complex with PTPPPLPP peptide

Ramirez-Espain, X., Ruiz, L., Martin-Malpartida, P., Oschkinat, H., Macias, M.J.

(2007) J Mol Biology 373: 1255-1268

Released	2007-11-06
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Formin-1 (protein) Transcription elongation regulator 1 (protein)

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2RM0 \| pdb_00002rm0	Download File View File

FBP28WW2 domain in complex with a PPPLIPPPP peptide

Ramirez-Espain, X., Ruiz, L., Martin-Malpartida, P., Oschkinat, H., Macias, M.J.

(2007) J Mol Biology 373: 1255-1268

Released	2007-11-06
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Formin-1 (protein) Transcription elongation regulator 1 (protein)

Explore in 3D

5MEY \| pdb_00005mey	Download File View File

Crystal structure of Smad4-MH1 bound to the GGCGC site.

Kaczmarska, Z., Freier, R., Marquez, J.A., Macias, M.J.

(2017) Nat Commun 8: 2070-2070

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	MH1 domain of human Smad4 (protein) DNA (5'-D(PAPTPGPCPGPGPGPCPGPCPGPCPCPCPGPCPAPT)-3') (nucleic acid)
Unique Ligands	CA, CL, EDO, PEG, ZN

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5MEZ \| pdb_00005mez	Download File View File

Crystal structure of Smad4-MH1 bound to the GGCT site.

Kaczmarska, Z., Freier, R., Marquez, J.A., Macias, M.J.

(2017) Nat Commun 8: 2070-2070

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Homo sapiens
Macromolecule	MH1 domain of human Smad4 (protein) DNA (5'-D(PGPCPAPGPGPCPTPAPGPCPCPTPGPCP*A)-3') (nucleic acid)
Unique Ligands	CL, ZN

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5MF0 \| pdb_00005mf0	Download File View File

Crystal structure of Smad4-MH1 bound to the GGCCG site.

Kaczmarska, Z., Freier, R., Marquez, J.A., Macias, M.J.

(2017) Nat Commun 8: 2070-2070

Released	2017-11-15
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Homo sapiens
Macromolecule	MH1 domain of human Smad4 (protein) DNA (5'-D(PAPCPGPGPGPCPCPGPCPGPGPCPCPCPGPT)-3') (nucleic acid)
Unique Ligands	CL, ZN

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5NM9 \| pdb_00005nm9	Download File View File

Crystal structure of the placozoa Trichoplax adhaerens Smad4-MH1 bound to the GGCGC site.

Kaczmarska, Z., Freier, R., Marquez, J.A., Macias, M.J.

(2017) Nat Commun 8: 2070-2070

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens Trichoplax adhaerens
Macromolecule	Mothers against decapentaplegic homolog (protein) DNA (5'-D(PAPTPGPCPGPGPGPCPGPCPGPCPCPCPGPCPAPT)-3') (nucleic acid)
Unique Ligands	ZN

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5OD6 \| pdb_00005od6	Download File View File

Crystal structure of Smad3-MH1 bound to the GGCGC site.

Kaczmarska, Z., Marquez, J.A., Macias, M.J.

(2017) Nat Commun 8: 2070-2070

Released	2017-11-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Mothers against decapentaplegic homolog 3 (protein) DNA (5'-D(PTPGPCPAPGPGPCPGPCPGPCPCPTPGPCPA)-3') (nucleic acid)
Unique Ligands	ZN

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5ODG \| pdb_00005odg	Download File View File

Crystal structure of Smad3-MH1 bound to the GGCT site.

Kaczmarska, Z., Marquez, J.A., Macias, M.J.

(2017) Nat Commun 8: 2070-2070

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens
Macromolecule	Mothers against decapentaplegic homolog 3 (protein) DNA (5'-D(PCPAPGPGPCPTPAPGPCPCPTPGPCPA)-3') (nucleic acid)
Unique Ligands	CL, ZN

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6FQP \| pdb_00006fqp	Download File View File

Crystal structure of TALE homeobox domain transcription factor TGIF1 with its consensus DNA

Guca, E., Macias, M.J.

(2018) Nucleic Acids Res 46: 9220-9235

Released	2018-07-25
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	Homeobox protein TGIF1 (protein) DNA (5'-D(PAPTPTPGPAPCPAPGPCPTPGPTPCPAPAPT)-3') (nucleic acid)
Unique Ligands	CA

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6FQQ \| pdb_00006fqq	Download File View File

Crystal structure of TALE homeobox domain transcription factor TGIF1 double alanine mutant bound to its consensus DNA

Guca, E., Macias, M.J.

(2018) Nucleic Acids Res 46: 9220-9235

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.25000253887 Å
Organisms	Homo sapiens
Macromolecule	Homeobox protein TGIF1 (protein) DNA (5'-D(PAPTPTPGPAPCPAPGPCPTPGPTPCPAPAPT)-3') (nucleic acid)
Unique Ligands	CL

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6FZS \| pdb_00006fzs	Download File View File

Crystal structure of Smad5-MH1 bound to the GGCGC site.

Kaczmarska, Z., Marquez, J.A., Macias, M.J.

(2021) Computational And Structural Biotechnology Journal 19:

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Mothers against decapentaplegic homolog 5 (protein) DNA (5'-D(PTPGPCPAPGPGPCPGPCPGPCPCPTPGPCPA)-3') (nucleic acid)
Unique Ligands	ZN

1 to 25 of 44 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1YIU | pdb_00001yiu

2B7E | pdb_00002b7e

2JO9 | pdb_00002jo9

2JOC | pdb_00002joc

2JUP | pdb_00002jup

2K85 | pdb_00002k85

2MPT | pdb_00002mpt

2N1O | pdb_00002n1o

2N4R | pdb_00002n4r

2N4S | pdb_00002n4s

2N4T | pdb_00002n4t

2N4U | pdb_00002n4u

2N4V | pdb_00002n4v

2N4W | pdb_00002n4w

2RLY | pdb_00002rly

2RM0 | pdb_00002rm0

5MEY | pdb_00005mey

5MEZ | pdb_00005mez

5MF0 | pdb_00005mf0

5NM9 | pdb_00005nm9

5OD6 | pdb_00005od6

5ODG | pdb_00005odg

6FQP | pdb_00006fqp

6FQQ | pdb_00006fqq

6FZS | pdb_00006fzs