RCSB PDB: Search

1KBY	Download File View File

Structure of Photosynthetic Reaction Center with bacteriochlorophyll-bacteriopheophytin heterodimer

Camara-Artigas, A., Magee, C., Goetsch, A., Allen, J.P.

(2002) Photosynth Res 74: 87-93

Released	2002-11-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN (protein) PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN (protein) PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE, SPO, U10

1YFD	Download File View File

Crystal structure of the Y122H mutant of ribonucleotide reductase R2 protein from E. coli

Kolberg, M., Logan, D.T., Bleifuss, G., Poetsch, S., Sjoeberg, B.M., Graeslund, A., Lubitz, W., Lassmann, G., Lendzian, F.

(2005) J Biol Chem 280: 11233-11246

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Ribonucleoside-diphosphate reductase 1 beta chain (protein)
Unique Ligands	FEO, HG

2MH7	Download File View File

Solution structure of oxidized [2Fe-2S] ferredoxin PetF from Chlamydomonas reinhardtii

Rumpel, S., Siebel, J.F., Fares, C., Reijerse, E.J., Lubitz, W.

To be published

Released	2014-11-19
Method	SOLUTION NMR
Organisms	Chlamydomonas reinhardtii
Macromolecule	Ferredoxin, chloroplastic (protein)
Unique Ligands	FES

2N0S	Download File View File

HADDOCK model of ferredoxin and [FeFe] hydrogenase complex

Rumpel, S., Siebel, J., Fares, C., Reijerse, E., Lubitz, W.

(2015) Chembiochem 16: 1663-1669

Released	2015-06-24
Method	SOLUTION NMR
Organisms	Chlamydomonas reinhardtii
Macromolecule	Fe-hydrogenase (protein) Ferredoxin, chloroplastic (protein)
Unique Ligands	FES, SF4

Busch, A.W.U., Frankenberg-Dinkel, N., Hofmann, E.

2X9I	Download File View File

Structure of the Mutant D105N of Phycoerythrobilin Synthase PebS from the Cyanophage P-SSM2 in complex with bound substrate Biliverdin IXA

(2011) Biochem J 433: 469

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Prochlorococcus phage P-SSM2
Macromolecule	PHYCOBILIN SYNTHASE (protein)
Unique Ligands	BLA, SO4

Busch, A.W.U., Frankenberg-Dinkel, N., Hofmann, E.

2X9J	Download File View File

Structure of the Mutant D206N of Phycoerythrobilin Synthase PebS from the Cyanophage P-SSM2 in complex with bound substrate Biliverdin IXA

(2011) Biochem J 433: 469

Released	2010-11-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Prochlorococcus phage P-SSM2
Macromolecule	PHYCOERYTHROBILIN SYNTHASE (protein)
Unique Ligands	BLA

Busch, A.W.U., Frankenberg-Dinkel, N., Hofmann, E.

2X9O	Download File View File

STRUCTURE OF 15, 16- DIHYDROBILIVERDIN:FERREDOXIN OXIDOREDUCTASE (PebA)

(2011) Biochem J 439: 257

Released	2011-03-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Synechococcus sp. WH 8020
Macromolecule	15,16-DIHYDROBILIVERDIN-FERREDOXIN OXIDOREDUCTASE (protein)
Unique Ligands	BLA

3MJO	Download File View File

Small subunit (R2F) of native ribonucleotide reductase from Corynebacterium ammoniagenes

Ogata, H., Stolle, P., Stehr, M., Auling, G., Lubitz, W.

(2010) J Am Chem Soc 132: 11197-11213

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Corynebacterium ammoniagenes
Macromolecule	Ribonucleotide reductase subunit R2F (protein)
Unique Ligands	MN3

3MYR	Download File View File

Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state

Ogata, H., Kellers, P., Lubitz, W.

(2010) J Mol Biol 402: 428-444

Released	2010-08-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Allochromatium vinosum
Macromolecule	Hydrogenase (NiFe) small subunit HydA (protein) Nickel-dependent hydrogenase large subunit (protein)
Unique Ligands	CL, F3S, IMD, MG, NFV, SF4

4HPA	Download File View File

Crystal structure of Nitrophorin 4 from Rhodnius prolixus Complexed with sulfide ion at pH 7.4

(2013) J Inorg Biochem 122: 38-48

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodnius prolixus
Macromolecule	Nitrophorin-4 (protein)
Unique Ligands	H2S, HEM

4HPB	Download File View File

Crystal structure of Nitrophorin 4 from Rhodnius prolixus Complexed with Beta-Mercaptoethanol at pH 7.4

(2013) J Inorg Biochem 122: 38-48

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rhodnius prolixus
Macromolecule	Nitrophorin-4 (protein)
Unique Ligands	BME, HEM

4HPC	Download File View File

Crystal structure of Nitrophorin 4 from Rhodnius prolixus Complexed with Cysteine at pH 7.4

(2013) J Inorg Biochem 122: 38-48

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Rhodnius prolixus
Macromolecule	Nitrophorin-4 (protein)
Unique Ligands	CYS, HEM

4HPD	Download File View File

Crystal structure of Nitrophorin 4 from Rhodnius prolixus Complexed with homocysteine at pH 7.4

(2013) J Inorg Biochem 122: 38-48

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Rhodnius prolixus
Macromolecule	Nitrophorin-4 (protein)
Unique Ligands	HCS, HEM

4HR0	Download File View File

R2-like ligand-binding oxidase with aerobically reconstituted metal cofactor

(2013) Proc Natl Acad Sci U S A 110: 17189-17194

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.896 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	Ribonuleotide reductase small subunit (protein)
Unique Ligands	FE, MN, MN3, NA, PLM

4HR4	Download File View File

R2-like ligand-binding oxidase with anaerobically reconstituted metal cofactor

(2013) Proc Natl Acad Sci U S A 110: 17189-17194

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	Ribonuleotide reductase small subunit (protein)
Unique Ligands	FE2, MN, PLM

4HR5	Download File View File

R2-like ligand-binding oxidase without metal cofactor

(2013) Proc Natl Acad Sci U S A 110: 17189-17194

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.291 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	Ribonuleotide reductase small subunit (protein)
Unique Ligands	PLM

4U9H	Download File View File

Ultra High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

Ogata, H., Nishikawa, K., Lubitz, W.

(2015) Nature 520: 571-574

Released	2015-01-21
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Nitratidesulfovibrio vulgaris str. 'Miyazaki F
Macromolecule	Periplasmic [NiFe] hydrogenase large subunit (protein) Periplasmic [NiFe] hydrogenase small subunit (protein)
Unique Ligands	F3S, MG, MPD, NWN, SF4, TRS

4U9I	Download File View File

High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

Ogata, H., Nishikawa, K., Lubitz, W.

(2015) Nature 520: 571-574

Released	2015-01-21
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Nitratidesulfovibrio vulgaris str. 'Miyazaki F
Macromolecule	Periplasmic [NiFe] hydrogenase large subunit (protein) Periplasmic [NiFe] hydrogenase small subunit (protein)
Unique Ligands	F3S, MG, MPD, NWN, SF4, TRS

5EKB	Download File View File

R2-like ligand-binding oxidase with aerobically reconstituted Mn/Fe cofactor (reconstituted in solution)

(2016) J Inorg Biochem 162: 164-177

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.074 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	Ribonucleotide reductase small subunit (protein)
Unique Ligands	FE, MN3, PLM

5H0U	Download File View File

Crystal structure of the catalytic domain of membrane type 1 matrix metalloproteinase

Ogata, H., Decaneto, E., Lubitz, W.

(2017) Phys Chem Chem Phys 19: 30316-30331

Released	2017-10-04
Method	X-RAY DIFFRACTION 2.239 Å
Organisms	Homo sapiens unidentified
Macromolecule	HIS-HIS-HIS-HIS-HIS-HIS (protein) Matrix metalloproteinase-14 (protein)
Unique Ligands	CA, EPE, GOL, ZN

5HWZ	Download File View File

Crystal structure of nitrophorin 4 D30N mutant with nitrite

Ogata, H., He, C., Lubitz, W.

(2016) Chem Sci 7: 5332-5340

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rhodnius prolixus
Macromolecule	Nitrophorin-4 (protein)
Unique Ligands	HEM, NO2

Caserta, G., Pecqueur, L., Fontecave, M.

5KH0	Download File View File

Crystal Structure of HydF from thermosipho melanesiensis in complex with a [4Fe-4S] cluster

(2017) Nat Chem Biol 13: 779-784

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermosipho melanesiensis BI429
Macromolecule	Small GTP-binding protein (protein)
Unique Ligands	SF4

Caserta, G., Pecqueur, L., Fontecave, M.

5LAD	Download File View File

Crystal Structure of apo HydF from thermotoga maritima

(2017) Nat Chem Biol 13: 779-784

Released	2017-05-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermotoga maritima
Macromolecule	Putative GTP-binding protein (protein)

5OEF	Download File View File

Active semisynthetic [FeFe]-hydrogenase CpI with aza-diselenato-bridged [2Fe] cofactor

Kertess, L., Esselborn, J., Happe, T., Hofmann, E.

(2017) Dalton Trans 46: 16947-16958

Released	2017-11-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Clostridium pasteurianum
Macromolecule	Iron hydrogenase 1 (protein)
Unique Ligands	9SQ, FES, MG, SF4