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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lape, R."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Danio rerio (20)
	Rattus norvegicus (6)

Taxonomy

Eukaryota (26)

Experimental Method

ELECTRON MICROSCOPY (26)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	2.5 - 3.0 (5)
	3.0 - 3.5 (18)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

2020 - 2024 (26)

Membrane Protein Annotation

	OPM (26)
	PDBTM (26)
	mpstruc (21)
	MemProtMD (20)

Symmetry Type

Cyclic (26)

AllSelected

1 to 25 of 26 Structures

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6PLO \| pdb_00006plo	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor YGF mutant bound with GABA in SMA,open state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU
Unique branched monosaccharides	BMA, NAG

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6PLP \| pdb_00006plp	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor YGF mutant bound with GABA in SMA, desensitized state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU
Unique branched monosaccharides	BMA, NAG

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6PLQ \| pdb_00006plq	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor YGF mutant bound with GABA in SMA, super-open state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU
Unique branched monosaccharides	BMA, NAG

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6PLR \| pdb_00006plr	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with glycine in nanodisc, desensitized state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	GLY, OCT, UNL
Unique branched monosaccharides	NAG

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6PLS \| pdb_00006pls	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with taurine in nanodisc, desensitized state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	TAU, UNL
Unique branched monosaccharides	NAG

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6PLT \| pdb_00006plt	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with taurine in nanodisc, closed state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	TAU, UNL
Unique branched monosaccharides	NAG

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6PLU \| pdb_00006plu	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with GABA in nanodisc, desensitized state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU, UNL
Unique branched monosaccharides	NAG

Explore in 3D

6PLV \| pdb_00006plv	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with GABA in nanodisc, closed state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU, UNL
Unique branched monosaccharides	NAG

Explore in 3D

6PLW \| pdb_00006plw	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with GABA in SMA, super-open state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6PLX \| pdb_00006plx	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with GABA in SMA, desensitized state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6PLY \| pdb_00006ply	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with GABA in SMA, open state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6PLZ \| pdb_00006plz	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with GABA in SMA, closed state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	ABU
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6PM0 \| pdb_00006pm0	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with Taurine in SMA, super-open state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	TAU
Unique branched monosaccharides	BMA, NAG

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6PM1 \| pdb_00006pm1	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with Taurine in SMA, desensitized state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	TAU
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6PM2 \| pdb_00006pm2	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with Taurine in SMA, open state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	TAU
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6PM3 \| pdb_00006pm3	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with Taurine in SMA, closed state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	TAU
Unique branched monosaccharides	NAG

Explore in 3D

6PM4 \| pdb_00006pm4	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with Glycine in SMA, super-open state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	GLY
Unique branched monosaccharides	BMA, NAG

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6PM5 \| pdb_00006pm5	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with Glycine in SMA, desensitized state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	GLY
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6PM6 \| pdb_00006pm6	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor bound with Glycine in SMA, open state

Yu, J., Zhu, H., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	GLY
Unique branched monosaccharides	BMA, NAG

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6PXD \| pdb_00006pxd	Download File View File

CryoEM structure of zebra fish alpha-1 glycine receptor, Apo state

Du, J., Lu, W., Gouaux, E.

(2021) Cell 184: 957-968.e21

Released	2021-02-10
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Danio rerio
Macromolecule	Glycine receptor subunit alphaZ1 (protein)
Unique Ligands	CL
Unique branched monosaccharides	NAG

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7QHB \| pdb_00007qhb	Download File View File

Active state of GluA1/2 in complex with TARP gamma 8, L-glutamate and CTZ

Herguedas, B., Kohegyi, B., Zhang, D., Greger, I.H.

(2022) Nat Commun 13: 734-734

Released	2022-02-23
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Rattus norvegicus
Macromolecule	Isoform Flip of Glutamate receptor 1 (protein) Isoform Flip of Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-8 subunit (protein)
Unique Ligands	79N, CYZ, GLU, OLC, PAM

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7QHH \| pdb_00007qhh	Download File View File

Desensitized state of GluA1/2 AMPA receptor in complex with TARP-gamma 8 (TMD-LBD)

Herguedas, B., Kohegyi, B., Dohrke, J.N., Watson, J.F., Zhang, D., Ho, H., Shaikh, S., Lape, R., Krieger, J.M., Greger, I.H.

(2022) Nat Commun 13: 734-734

Released	2022-02-23
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Rattus norvegicus
Macromolecule	Isoform Flip of Glutamate receptor 1 (protein) Isoform Flip of Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-8 subunit (protein)
Unique Ligands	79N, GLU, OLC, PAM

Explore in 3D

8AYL \| pdb_00008ayl	Download File View File

Resting state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and ligand JNJ-61432059

Zhang, D., Lape, R., Shaikh, S., Kohegyi, B., Watson, J.F., Cais, O., Nakagawa, T., Greger, I.

(2023) Nat Commun 14: 1659-1659

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	Isoform Flip of Glutamate receptor 1 (protein) Isoform Flip of Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-8 subunit (protein)
Unique Ligands	OIJ, OLC, PLM, POV, ZK1

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8AYM \| pdb_00008aym	Download File View File

Resting state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and ligand JNJ-55511118

Zhang, D., Lape, R., Shaikh, S., Kohegyi, B., Watson, J.F., Cais, O., Nakagawa, T., Greger, I.H.

(2023) Nat Commun 14: 1659-1659

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Rattus norvegicus
Macromolecule	Isoform Flip of Glutamate receptor 1 (protein) Isoform Flip of Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-8 subunit (protein)
Unique Ligands	OLC, PLM, POV, XVD, ZK1

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8AYN \| pdb_00008ayn	Download File View File

Resting state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and ligand LY3130481

Zhang, D., Lape, R., Shaikh, S., Kohegyi, B., Watson, J.F., Cais, O., Nakagawa, T., Greger, I.H.

(2023) Nat Commun 14: 1659-1659

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	Isoform Flip of Glutamate receptor 1 (protein) Isoform Flip of Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-8 subunit (protein)
Unique Ligands	OLC, OLR, PLM, POV, ZK1

1 to 25 of 26 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

6PLO | pdb_00006plo

6PLP | pdb_00006plp

6PLQ | pdb_00006plq

6PLR | pdb_00006plr

6PLS | pdb_00006pls

6PLT | pdb_00006plt

6PLU | pdb_00006plu

6PLV | pdb_00006plv

6PLW | pdb_00006plw

6PLX | pdb_00006plx

6PLY | pdb_00006ply

6PLZ | pdb_00006plz

6PM0 | pdb_00006pm0

6PM1 | pdb_00006pm1

6PM2 | pdb_00006pm2

6PM3 | pdb_00006pm3

6PM4 | pdb_00006pm4

6PM5 | pdb_00006pm5

6PM6 | pdb_00006pm6

6PXD | pdb_00006pxd

7QHB | pdb_00007qhb

7QHH | pdb_00007qhh

8AYL | pdb_00008ayl

8AYM | pdb_00008aym

8AYN | pdb_00008ayn