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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lamark, T."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (15)
	Arabidopsis thaliana (3)

Taxonomy

Eukaryota (18)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (5)
	2.0 - 2.5 (1)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2015 - 2019 (11)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (2)
	Transferases (2)

Symmetry Type

	Asymmetric (10)
	Cyclic (4)
	Helical (4)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Artifacts (1)

AllSelected

1 to 18 of 18 Structures

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4UF8 \| pdb_00004uf8	Download File View File

Electron cryo-microscopy structure of PB1-p62 filaments

Ciuffa, R., Lamark, T., Tarafder, A., Guesdon, A., Rybina, S., Hagen, W.J.H., Johansen, T., Sachse, C.

(2015) Cell Rep 11: 748

Released	2015-05-13
Method	ELECTRON MICROSCOPY 10.9 Å
Organisms	Homo sapiens
Macromolecule	SEQUESTOSOME-1 (protein)

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4UF9 \| pdb_00004uf9	Download File View File

Electron cryo-microscopy structure of PB1-p62 type T filaments

Ciuffa, R., Lamark, T., Tarafder, A., Guesdon, A., Rybina, S., Hagen, W.J.H., Johansen, T., Sachse, C.

(2015) Cell Rep 11: 748

Released	2015-05-13
Method	ELECTRON MICROSCOPY 10.3 Å
Organisms	Homo sapiens
Macromolecule	SEQUESTOSOME-1 (protein)

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5D94 \| pdb_00005d94	Download File View File

Crystal structure of LC3-LIR peptide complex

Takagi, K., Mizushima, T., Johansen, T.

(2015) J Biological Chem 290: 29361-29374

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) Peptide from FYVE and coiled-coil domain-containing protein 1 (protein)

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5LXH \| pdb_00005lxh	Download File View File

GABARAP-L1 ATG4B LIR Complex

Mouilleron, S., Skytte Rasmussen, M., Kumar Shrestha, B., Wirth, M., Bowitz Larsen, K., Abudu Princely, Y., Sjottem, E., Tooze, S., Lamark, T., Johansen, T., Lee, R.

(2017) Autophagy 13: 834-853

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	Cysteine protease ATG4B (protein) Gamma-aminobutyric acid receptor-associated protein-like 1 (protein)
Unique Ligands	GOL, SO4

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5LXI \| pdb_00005lxi	Download File View File

GABARAP-L1 ATG4B LIR Complex

Mouilleron, S., Skytte Rasmussen, M., Kumar Shrestha, B., Wirth, M., Bowitz Larsen, K., Abudu Princely, Y., Sjottem, E., Tooze, S., Lamark, T., Johansen, T., Lee, R.

(2017) Autophagy 13: 834-853

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Homo sapiens
Macromolecule	Cysteine protease ATG4B (protein) Gamma-aminobutyric acid receptor-associated protein-like 1 (protein)
Unique Ligands	EDO, MG, PEG, PER, PGE

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6HOG \| pdb_00006hog	Download File View File

Structure of VPS34 LIR motif bound to GABARAP

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	EDO, GOL, SO4

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6HOH \| pdb_00006hoh	Download File View File

Structure of VPS34 LIR motif (S249E) bound to GABARAP

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	PGE

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6HOI \| pdb_00006hoi	Download File View File

Structure of Beclin1 LIR motif bound to GABARAPL1

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Homo sapiens
Macromolecule	Beclin-1 (protein) Gamma-aminobutyric acid receptor-associated protein-like 1 (protein)
Unique Ligands	ACT, EDO

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6HOJ \| pdb_00006hoj	Download File View File

Structure of Beclin1 LIR motif bound to GABARAP

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	Beclin-1,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	EDO, SO4

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6HOK \| pdb_00006hok	Download File View File

Structure of Beclin1 LIR (S96E) motif bound to GABARAP

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Beclin-1,Gamma-aminobutyric acid receptor-associated protein (protein)
Unique Ligands	EDO

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6HOL \| pdb_00006hol	Download File View File

Structure of ATG14 LIR motif bound to GABARAPL1

Mouilleron, S., Birgisdottir, A.B., Bhujbal, Z., Wirth, M., Sjottem, E., Evjen, G., Zhang, W., Lee, R., O'Reilly, N., Tooze, S., Lamark, T., Johansen, T.

(2019) Autophagy 15: 1333-1355

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Beclin 1-associated autophagy-related key regulator (protein) Gamma-aminobutyric acid receptor-associated protein-like 1 (protein)
Unique Ligands	GOL, SO4

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6TGN \| pdb_00006tgn	Download File View File

Cryo-EM structure of AtNBR1-PB1 filament (L-type)

Jakobi, A.J., Sachse, C.

(2020) Nat Commun 11: 440-440

Released	2020-02-12
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Protein NBR1 homolog (protein)

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6TGP \| pdb_00006tgp	Download File View File

Cryo-EM structure of AtNBR1-PB1 filament (S-type)

Jakobi, A.J., Sachse, C.

(2020) Nat Commun 11: 440-440

Released	2020-02-19
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Protein NBR1 homolog (protein)

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6TGS \| pdb_00006tgs	Download File View File

AtNBR1-PB1 domain

Jakobi, A.J., Sachse, C.

(2020) Nat Commun 11: 440-440

Released	2020-02-12
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Arabidopsis thaliana
Macromolecule	Protein NBR1 homolog (protein)
Unique Ligands	CL, GOL, PEG, SIN, SO4

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6TGY \| pdb_00006tgy	Download File View File

Cryo-EM structure of p62-PB1 filament (L-type)

Jakobi, A.J., Huber, S.T., Mortensen, S.A., Sachse, C.

(2020) Nat Commun 11: 440-440

Released	2020-02-12
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Sequestosome-1 (protein)

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6TH3 \| pdb_00006th3	Download File View File

Cryo-EM structure of p62-PB1 filament (S-type)

Jakobi, A.J., Huber, S.T., Mortensen, S.A., Sachse, C.

(2020) Nat Commun 11: 440-440

Released	2020-02-12
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Sequestosome-1 (protein)

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6YOO \| pdb_00006yoo	Download File View File

Structure of SAMM50 LIR bound to GABARAPL1

Mouilleron, S., Wenxin, Z., Johansen, T., Tooze, S., Abudu, Y.P., Lamark, T.

To be published

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Homo sapiens
Macromolecule	Gamma-aminobutyric acid receptor-associated protein-like 1 (protein) Sorting and assembly machinery component 50 homolog (protein)
Unique Ligands	CL, EDO, ZN

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6YOP \| pdb_00006yop	Download File View File

Structure of SAMM50 LIR bound to GABARAP

Mouilleron, S., Wenxin, Z., Johansen, T., Tooze, S., Abudu, Y.P., Lamark, T.

To be published

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Sorting and assembly machinery component 50 homolog,Gamma-aminobutyric acid receptor-associated protein (protein)

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4UF8 | pdb_00004uf8

Electron cryo-microscopy structure of PB1-p62 filaments

4UF9 | pdb_00004uf9

Electron cryo-microscopy structure of PB1-p62 type T filaments

5D94 | pdb_00005d94

Crystal structure of LC3-LIR peptide complex

5LXH | pdb_00005lxh

GABARAP-L1 ATG4B LIR Complex

5LXI | pdb_00005lxi

GABARAP-L1 ATG4B LIR Complex

6HOG | pdb_00006hog

Structure of VPS34 LIR motif bound to GABARAP

6HOH | pdb_00006hoh

Structure of VPS34 LIR motif (S249E) bound to GABARAP

6HOI | pdb_00006hoi

Structure of Beclin1 LIR motif bound to GABARAPL1

6HOJ | pdb_00006hoj

Structure of Beclin1 LIR motif bound to GABARAP

6HOK | pdb_00006hok

Structure of Beclin1 LIR (S96E) motif bound to GABARAP

6HOL | pdb_00006hol

Structure of ATG14 LIR motif bound to GABARAPL1

6TGN | pdb_00006tgn

Cryo-EM structure of AtNBR1-PB1 filament (L-type)

6TGP | pdb_00006tgp

Cryo-EM structure of AtNBR1-PB1 filament (S-type)

6TGS | pdb_00006tgs

AtNBR1-PB1 domain

6TGY | pdb_00006tgy

Cryo-EM structure of p62-PB1 filament (L-type)

6TH3 | pdb_00006th3

Cryo-EM structure of p62-PB1 filament (S-type)

6YOO | pdb_00006yoo

Structure of SAMM50 LIR bound to GABARAPL1

6YOP | pdb_00006yop

Structure of SAMM50 LIR bound to GABARAP

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4UF8 | pdb_00004uf8

4UF9 | pdb_00004uf9

5D94 | pdb_00005d94

5LXH | pdb_00005lxh

5LXI | pdb_00005lxi

6HOG | pdb_00006hog

6HOH | pdb_00006hoh

6HOI | pdb_00006hoi

6HOJ | pdb_00006hoj

6HOK | pdb_00006hok

6HOL | pdb_00006hol

6TGN | pdb_00006tgn

6TGP | pdb_00006tgp

6TGS | pdb_00006tgs

6TGY | pdb_00006tgy

6TH3 | pdb_00006th3

6YOO | pdb_00006yoo

6YOP | pdb_00006yop