RCSB PDB: Search

6B3M	Download File View File

The crystal structure of a broadly-reactive human anti-hemagglutinin stalk antibody (70-1F02) in complex with H5 hemagglutinin

Shore, D.A., Yang, H., Stevens, J.

(2018) J Virol 92:

Released	2018-06-13
Method	X-RAY DIFFRACTION 3.92 Å
Organisms	Homo sapiens unidentified influenza virus
Macromolecule	70-1F02 Fab Heavy Chain (protein) 70-1F02 Fab Light Chain (protein) Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein)
Unique Ligands	BMA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

6N6B	Download File View File

The complex crystal structure of neuraminidase from A/Minnesota/11/2010 with B10 antibody.

Yang, H., Stevens, J.

(2019) Nat Microbiol 4: 2216-2225

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Influenza A virus (A/Minnesota/11/2010(H3N2)) Mus musculus
Macromolecule	B10 antibody Heavy Chain Fab (protein) B10 antibody Light Chain Fab (protein) Neuraminidase (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

6NZ7	Download File View File

Crystal structure of broadly neutralizing Influenza A antibody 429 B01 in complex with Hemagglutinin Hong Kong 1968

Zhou, T., Kwong, P.D.

(2019) Sci Immunol 4:

Released	2019-05-08
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens Influenza A virus (A/Hong Kong/1/1968(H3N2))
Macromolecule	429 B01 FAB heavy chain (protein) 429 B01 FAB light chain (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG

6Q1Z	Download File View File

Crystal structure of human 1G04 Fab in complex with influenza virus neuraminidase from A/Hunan/02650/2016 (H7N9)

(2019) Science 366: 499-504

Released	2019-10-23
Method	X-RAY DIFFRACTION 3.446 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	1G04 Fab IgG1 heavy chain (protein) 1G04 Fab kappa light chain (protein) Neuraminidase (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

6Q20	Download File View File

Crystal structure of human 1E01 Fab in complex with influenza virus neuraminidase from A/Japan/305/1957 (H2N2)

(2019) Science 366: 499-504

Released	2019-10-23
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens Influenza A virus (A/Japan/305/1957(H2N2))
Macromolecule	1E01 Fab IgG1 heavy chain (protein) 1E01 Fab kappa light chain (protein) Neuraminidase (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

6Q23	Download File View File

Crystal structure of human 1G01 Fab in complex with influenza virus neuraminidase from A/California/04/2009 (H1N1)

(2019) Science 366: 499-504

Released	2019-10-23
Method	X-RAY DIFFRACTION 3.27 Å
Organisms	Homo sapiens Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	1G01 Fab IgG1 heavy chain (protein) 1G01 Fab kappa light chain (protein) Neuraminidase (protein)
Unique Ligands	CA, NAG

Dai, Y.N., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)

6V4N	Download File View File

Structure of human 1G05 Fab in complex with influenza virus neuraminidase from B/Phuket/3073/2013

(2020) Immunity 53: 852

Released	2020-10-07
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens Influenza B virus
Macromolecule	Antibody Fab heavy chain (protein) Antibody Fab light chain (protein) Neuraminidase (protein)
Unique Ligands	BMA, CA
Unique branched monosaccharides	BMA, NAG

Dai, Y.N., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)

6V4O	Download File View File

Structure of human 2E01 Fab in complex with influenza virus neuraminidase from B/Phuket/3073/2013

(2020) Immunity 53: 852

Released	2020-10-07
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Influenza B virus
Macromolecule	Antibody Fab heavy chain (protein) Antibody Fab light chain (protein) Neuraminidase (protein)
Unique Ligands	BMA, CA
Unique branched monosaccharides	NAG

7MEM	Download File View File

CryoEM structure of monoclonal Fab 045-09 2B05 binding the lateral patch of influenza virus H1 HA

Han, J., Ward, A.

(2021) Sci Transl Med 13:

Released	2021-07-28
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	Heavy chain of monoclonal antibody 045-09 2B05 (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein) Light chain of monoclonal antibody 045-09 2B05 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

Altomare, C.G., Bajic, G.

7RBU	Download File View File

SARS-CoV-2 Spike in complex with PVI.V6-14 Fab

(2022) mBio 13: e0358021-e0358021

Released	2022-05-04
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	PVI.V6-14 Fab heavy chain, variable region (protein) PVI.V6-14 Fab light chain, variable region (protein) Spike protein S1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Altomare, C.G., Bajic, G.

7RBV	Download File View File

SARS-CoV-2 Spike in complex with PVI.V6-14 Fab

(2022) mBio 13: e0358021-e0358021

Released	2022-05-04
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	PVI.V6-14 Fab heavy chain, variable region (protein) PVI.V6-14 Fab light chain, variable region (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

7S0I	Download File View File

CRYSTAL STRUCTURE OF N1 NEURAMINIDASE FROM A/Michigan/45/2015(H1N1)

(2021) mBio 12: e0224121-e0224121

Released	2021-12-08
Method	X-RAY DIFFRACTION 2.892 Å
Organisms	Influenza A virus (A/Michigan/45/2015(H1N1))
Macromolecule	Neuraminidase (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	MAN, NAG

7T3D	Download File View File

CryoEM map of anchor 222-1C06 Fab and lateral patch 2B05 Fab binding H1 HA

Han, J., Ward, A.B.

(2022) Nature 602: 314-320

Released	2022-01-12
Method	ELECTRON MICROSCOPY 3.38 Å
Organisms	Homo sapiens Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	NAG

7TYZ	Download File View File

Cryo-EM structure of SARS-CoV-2 spike in complex with FSR22, an anti-SARS-CoV-2 DARPin

(2023) Nat Chem Biol 19: 284-291

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.51 Å
Organisms	Escherichia phage EcSzw-2 Severe acute respiratory syndrome coronavirus 2
Macromolecule	DARPin FSR22 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

7TZ0	Download File View File

Cryo-EM structure of SARS-CoV-2 spike in complex with FSR22, an anti-SARS-CoV-2 DARPin (Local refinement of FSR22 and RBD)

(2023) Nat Chem Biol 19: 284-291

Released	2022-12-07
Method	ELECTRON MICROSCOPY 4.17 Å
Organisms	Escherichia phage EcSzw-2 Severe acute respiratory syndrome coronavirus 2
Macromolecule	DARPin FSR22 (protein) Spike glycoprotein (protein)

7U8J	Download File View File

Crystal structure of chimeric hemagglutinin cH4/3 in complex with broad protective antibody 31.a.83

(2022) Proc Natl Acad Sci U S A 119: e2200821119-e2200821119

Released	2022-06-08
Method	X-RAY DIFFRACTION 4.9 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Antibody Fab light chain (protein) Hemagglutinin HA1 subunit (protein) Hemagglutinin HA2 subunit (protein) antibody Fab heavy chain (protein)

7U8L	Download File View File

Crystal structure of chimeric hemagglutinin cH15/3 in complex with broad protective antibody 31.a.83

(2022) Proc Natl Acad Sci U S A 119: e2200821119-e2200821119

Released	2022-06-08
Method	X-RAY DIFFRACTION 4.56 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Antibody Fab light chain (protein) Hemagglutinin HA1 subunit (protein) Hemagglutinin HA2 subunit (protein) antibody Fab heavy chain (protein)

7U8M	Download File View File

Crystal structure of chimeric hemagglutinin cH15/3 in complex with broad protective antibodies 31.a.83 and FluA-20

(2022) Proc Natl Acad Sci U S A 119: e2200821119-e2200821119

Released	2022-06-08
Method	X-RAY DIFFRACTION 5.39 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Unique protein chains: 6

8D0Z	Download File View File

S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)

Ozorowski, G., Torres, J.L., Ward, A.B.

(2023) J Clin Invest 133:

Released	2023-03-22
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	S728-1157 Fab heavy chain variable region (protein) S728-1157 Fab light chain variable region (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

8DW2	Download File View File

Cryo-EM structure of SARS-CoV-2 RBD in complex with anti-SARS-CoV-2 DARPin,SR22, and two antibody Fabs, S309 and CR3022

(2023) Nat Chem Biol 19: 284-291

Released	2022-12-07
Method	ELECTRON MICROSCOPY 4.11 Å
Organisms	Escherichia phage EcSzw-2 Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 6
Unique branched monosaccharides	BMA, NAG

8DW3	Download File View File

Cryo-EM structure of SARS-CoV-2 RBD in complex with anti-SARS-CoV-2 DARPin,SR16m, and two antibody Fabs, S309 and CR3022

(2023) Nat Chem Biol 19: 284-291

Released	2022-12-07
Method	ELECTRON MICROSCOPY 4.26 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 6
Unique branched monosaccharides	BMA, NAG

8E6J	Download File View File

3H03 Fab in complex with influenza virus neuraminidase from A/Brevig Mission/1/1918 (H1N1)

Turner, H.L., Ozorowski, G., Ward, A.B.

(2023) Immunity 56: 1927-1938.e8

Released	2023-08-09
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens Influenza A virus (A/Brevig Mission/1/1918(H1N1))
Macromolecule	3H03 fragment antigen binding heavy chain (protein) 3H03 fragment antigen binding light chain (protein) Neuraminidase (protein)

8E6K	Download File View File

2H08 Fab in complex with influenza virus neuraminidase from A/Brevig Mission/1/1918 (H1N1)

Turner, H.L., Ozorowski, G., Ward, A.B.

(2023) Immunity 56: 1927-1938.e8

Released	2023-08-09
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens Influenza A virus (A/Brevig Mission/1/1918(H1N1))
Macromolecule	2H08 fragment antigen binding heavy chain (protein) 2H08 fragment antigen binding light chain (protein) Neuraminidase (protein)
Unique Ligands	NAG

8EQA	Download File View File

Crystal structure of human anti-N1 neuraminidase 2H08 Fab

(2023) Immunity 56: 1927

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	2H08 Fab heavy chain (protein) 2H08 Fab light chain (protein)
Unique Ligands	ZN

8EQC	Download File View File

Crystal structure of human anti-N1 neuraminidase 3H03 Fab