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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Klose, R.J."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (11)
	Escherichia coli K-12 (1)

Taxonomy

	Eukaryota (11)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

	Protein (12)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (11)

Enzyme Classification Name

Oxidoreductases (11)

Symmetry Type

	Asymmetric (8)
	Cyclic (4)

SCOP Classification

All beta proteins (9)

AllSelected

1 to 12 of 12 Structures

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Explore in 3D

2YBK \| pdb_00002ybk	Download File View File

JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE

Chowdhury, R., McDonough, M.A., Schofield, C.J.

(2011) EMBO Rep 12: 463-469

Released	2011-04-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	2HG, CL, NI, ZN

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2YBP \| pdb_00002ybp	Download File View File

JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41)

Chowdhury, R., McDonough, M.A., Schofield, C.J.

(2011) EMBO Rep 12: 463-469

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	HISTONE H3.1T (protein) LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	2HG, GOL, NI, ZN

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2YBS \| pdb_00002ybs	Download File View File

JMJD2A COMPLEXED WITH S-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41)

Chowdhury, R., Schofield, C.J.

(2011) EMBO Rep 12: 463-469

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Homo sapiens
Macromolecule	HISTONE H3.1T (protein) LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	GOL, NI, S2G, ZN

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2YC0 \| pdb_00002yc0	Download File View File

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH R-2-HYDROXYGLUTARATE

Chowdhury, R., Clifton, I.J., Schofield, C.J.

(2011) EMBO Rep 12: 463-469

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR (protein)
Unique Ligands	2HG, FE2, GOL, SO4

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2YDE \| pdb_00002yde	Download File View File

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH S-2-HYDROXYGLUTARATE

Chowdhury, R., Clifton, I.J., Schofield, C.J.

(2011) EMBO Rep 12: 463-469

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR (protein)
Unique Ligands	FE, GOL, S2G, SO4

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3C2I \| pdb_00003c2i	Download File View File

The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF

Ho, K.L., McNae, I.W., Schmiedeberg, L., Klose, R.J., Bird, A.P., Walkinshaw, M.D.

(2008) Mol Cell 29: 525-531

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Methyl-CpG-binding protein 2 (protein) DNA (5'-D(DAPDTPDAPDGPDAPDAPDGPDAPDAPDTPDTPDCP(5CM)PDGPDTPDTPDCPDCPDAPDG)-3') (nucleic acid) DNA (5'-D(DTPDCPDTPDGPDGPDAPDAP(5CM)PDGPDGPDAPDAPDTPDTPDCPDTPDTPDCPDTPDA)-3') (nucleic acid)

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3NJY \| pdb_00003njy	Download File View File

Crystal structure of JMJD2A complexed with 5-carboxy-8-hydroxyquinoline

King, O.N.F., Clifton, I.J., Wang, M., Maloney, D.J., Jadhav, A., Oppermann, U., Heightman, T.D., Simeonov, A., McDonough, M.A., Schofield, C.J.

(2010) PLoS One 5: e15535-e15535

Released	2010-12-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	8XQ, NI, ZN

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4AI8 \| pdb_00004ai8	Download File View File

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH DAMINOZIDE

King, O.N.F., Chowdhury, R., Rose, N.R., McDonough, M.A., Clifton, I.J., Schofield, C.J., Kawamura, A.

(2012) J Med Chem 55: 6639-6643

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR (protein)
Unique Ligands	DZA, GOL, SO4, ZN

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4AI9 \| pdb_00004ai9	Download File View File

JMJD2A Complexed with Daminozide

Chowdhury, R., Schofield, C.J.

(2012) J Med Chem 55: 6639-6643

Released	2012-10-03
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	CL, DZA, GOL, NI, ZN

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4BIO \| pdb_00004bio	Download File View File

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH 8-HYDROXYQUINOLINE-5- CARBOXYLIC ACID

Chowdhury, R., Schofield, C.J.

(2013) Chem Sci 4: 3110-3117

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR (protein)
Unique Ligands	8XQ, FE, GOL, SO4

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4BIS \| pdb_00004bis	Download File View File

JMJD2A COMPLEXED WITH 8-HYDROXYQUINOLINE-4-CARBOXYLIC ACID

Chowdhury, R., Thinnes, C., Schofield, C.J.

(2013) Chem Sci 4: 3110-3117

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.493 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	8HQ, CL, GOL, NI, ZN

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4JHT \| pdb_00004jht	Download File View File

Crystal Structure of AlkB in complex with 5-carboxy-8-hydroxyquinoline (IOX1)

Aik, W.S., McDonough, M.A., Schofield, C.J.

(2013) Chem Sci 4: 3110-3117

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Escherichia coli K-12
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase AlkB (protein)
Unique Ligands	8XQ, ACT, DMS, MN

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2YBK | pdb_00002ybk

JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE

2YBP | pdb_00002ybp

JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41)

2YBS | pdb_00002ybs

JMJD2A COMPLEXED WITH S-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41)

2YC0 | pdb_00002yc0

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH R-2-HYDROXYGLUTARATE

2YDE | pdb_00002yde

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH S-2-HYDROXYGLUTARATE

3C2I | pdb_00003c2i

The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF

3NJY | pdb_00003njy

Crystal structure of JMJD2A complexed with 5-carboxy-8-hydroxyquinoline

4AI8 | pdb_00004ai8

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH DAMINOZIDE

4AI9 | pdb_00004ai9

JMJD2A Complexed with Daminozide

4BIO | pdb_00004bio

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH 8-HYDROXYQUINOLINE-5- CARBOXYLIC ACID

4BIS | pdb_00004bis

JMJD2A COMPLEXED WITH 8-HYDROXYQUINOLINE-4-CARBOXYLIC ACID

4JHT | pdb_00004jht

Crystal Structure of AlkB in complex with 5-carboxy-8-hydroxyquinoline (IOX1)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2YBK | pdb_00002ybk

2YBP | pdb_00002ybp

2YBS | pdb_00002ybs

2YC0 | pdb_00002yc0

2YDE | pdb_00002yde

3C2I | pdb_00003c2i

3NJY | pdb_00003njy

4AI8 | pdb_00004ai8

4AI9 | pdb_00004ai9

4BIO | pdb_00004bio

4BIS | pdb_00004bis

4JHT | pdb_00004jht