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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kim, Y.S."

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Search Summary

This query matches 78 Structures.

Refinements

Structure Determination Methodology

experimental (78)

Scientific Name of Source Organism

	Bradyrhizobium japonicum (12)
	Staphylococcus aureus (10)
	synthetic construct (10)
	Oryza sativa Japonica Group (9)
	Homo sapiens (7)
	Bacteroides thetaiotaomicron (6)
	Pedobacter heparinus (6)
	Mus musculus (4)
	Hyphochytrium catenoides (3)
	Leishmania major (3)

More...

Taxonomy

	Bacteria (43)
	Eukaryota (33)
	other sequences (10)
	Archaea (2)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (73)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (78)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (29)
	2.0 - 2.5 (24)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (18)
	2005 - 2009 (17)
	2010 - 2014 (6)
	2015 - 2019 (19)
	2020 - 2024 (17)

Enzyme Classification Name

	Lyases (14)
	Transferases (7)
	Oxidoreductases (9)
	Hydrolases (6)
	Ligases (3)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (45)
	Cyclic (34)
	Dihedral (2)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (20)
	All beta proteins (14)
	All alpha proteins (13)
	Artifacts (5)
	Small proteins (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 78 Structures

Page 1 of 4

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1C2A \| pdb_00001c2a	Download File View File

CRYSTAL STRUCTURE OF BARLEY BBI

Song, H.K., Kim, Y.S., Yang, J.K., Moon, J., Lee, J.Y., Suh, S.W.

(1999) J Mol Biology 293: 1133-1144

Released	1999-12-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Hordeum vulgare
Macromolecule	BOWMAN-BIRK TRYPSIN INHIBITOR (protein)

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1DBG \| pdb_00001dbg	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B

Huang, W., Matte, A., Li, Y., Kim, Y.S., Linhardt, R.J., Su, H., Cygler, M.

(1999) J Mol Biology 294: 1257-1269

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	BGC, G4D, GCU, MAN, MXY, RAM, XYP

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1DBO \| pdb_00001dbo	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B

Huang, W., Matte, A., Li, Y., Kim, Y.S., Linhardt, R.J., Su, H., Cygler, M.

(1999) J Mol Biology 294: 1257-1269

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	ASG, BGC, G4D, GC4, GCU, MAN, MXY, RAM, XYP

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1HM2 \| pdb_00001hm2	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, GCU, IDR, MAN, MXY, RAM, XYP

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1HM3 \| pdb_00001hm3	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	BDP, GCU, MAN, MXY, NAG, RAM, XYP

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1HMU \| pdb_00001hmu	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, GCD, GCU, MAN, MXY, RAM, XYP

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1HMW \| pdb_00001hmw	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, BDP, GCD, GCU, MAN, MXY, NG6, RAM, XYP

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1O9N \| pdb_00001o9n	Download File View File

Crystal structure of the K62A mutant of Malonamidase E2 from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-12-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)

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1O9O \| pdb_00001o9o	Download File View File

Crystal structure of the S131A mutant of Malonamidase E2 complexed with malonamate from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-12-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)
Unique Ligands	MLM

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1O9P \| pdb_00001o9p	Download File View File

Crystal structure of the S131A mutant of Malonamidase E2 complexed with malonate from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)
Unique Ligands	MLA

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1O9Q \| pdb_00001o9q	Download File View File

Crystal structure of the S155C mutant of Malonamidase E2 from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)

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1OBI \| pdb_00001obi	Download File View File

Crystal structure of the G130A mutant of Malonamidase E2 from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)

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1OBJ \| pdb_00001obj	Download File View File

Crystal structure of the T150A mutant of Malonamidase E2 from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)

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1OBK \| pdb_00001obk	Download File View File

crystal structure of the R158Q mutant of Malonamidase E2 from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2004-02-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)

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1OBL \| pdb_00001obl	Download File View File

crystal structure of the S133A mutant of Malonamidase E2 complexed with malonate from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2004-02-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)
Unique Ligands	MLA

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1OCH \| pdb_00001och	Download File View File

Crystal structure of the S155C mutant of malonamidase E2 from Bradyrhizobium japonicum

Shin, S., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)

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1OCK \| pdb_00001ock	Download File View File

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 FROM BRADYRHIZOBIUM JAPONICUM

Shin, S., Ha, N.-C., Lee, T.-H., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-03-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)

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1OCL \| pdb_00001ocl	Download File View File

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COMPLEXED WITH MALONATE FROM BRADYRHIZOBIUM JAPONICUM

Shin, S., Ha, N.-C., Lee, T.-H., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-02-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)
Unique Ligands	MLA

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1OCM \| pdb_00001ocm	Download File View File

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COVALENTLY COMPLEXED WITH PYROPHOSPHATE FROM BRADYRHIZOBIUM JAPONICUM

Shin, S., Ha, N.-C., Lee, T.-H., Oh, B.-H.

(2003) J Biological Chem 278: 24937

Released	2003-02-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	MALONAMIDASE E2 (protein)
Unique Ligands	POP

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1TX6 \| pdb_00001tx6	Download File View File

trypsin:BBI complex

Song, H.K., Park, E.Y., Kim, J.A., Kim, H.W., Kim, Y.S.

(2004) J Mol Biology 343: 173-186

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hordeum vulgare Sus scrofa
Macromolecule	Bowman-Birk type trypsin inhibitor (protein) Trypsin (protein)
Unique Ligands	CA

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1XNG \| pdb_00001xng	Download File View File

Crystal Structure of NH3-dependent NAD+ synthetase from Helicobacter pylori

Kang, G.B., Kim, Y.S., Im, Y.J., Rho, S.H., Lee, J.H., Eom, S.H.

(2005) Proteins 58: 985-988

Released	2005-04-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Helicobacter pylori
Macromolecule	NH(3)-dependent NAD(+) synthetase (protein)
Unique Ligands	ATP, DND, MG