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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kain, J."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Homo sapiens (22)
	Severe acute respiratory syndrome coronavirus 2 (20)
	Enterobacteria phage T6 (11)
	synthetic construct (11)
	Chiloscyllium plagiosum (2)

Taxonomy

	Eukaryota (24)
	Riboviria (20)
	Duplodnaviria (11)
	other sequences (11)

Experimental Method

	ELECTRON MICROSCOPY (18)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	3.5 - 4.0 (6)
	4.0 - 4.5 (2)
	> 4.5 (7)

Release Date

2020 - 2024 (24)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

	Asymmetric (15)
	Cyclic (8)
	Dihedral (1)

AllSelected

1 to 24 of 24 Structures

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7FBJ \| pdb_00007fbj	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing nanobody 17F6

Zhu, J., Xu, T., Feng, B., Liu, J.

(2022) Small Methods 6: e2200387-e2200387

Released	2022-07-13
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Chiloscyllium plagiosum Severe acute respiratory syndrome coronavirus 2
Macromolecule	New antigen receptor variable domain (protein) Spike protein S1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7FBK \| pdb_00007fbk	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain N501Y mutant in complex with neutralizing nanobody 20G6

Zhu, J., Xu, T., Feng, B., Liu, J.

(2022) Small Methods 6: e2200387-e2200387

Released	2022-07-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Chiloscyllium plagiosum Severe acute respiratory syndrome coronavirus 2
Macromolecule	New antigen receptor variable domain (protein) Spike protein S1 (protein)
Unique branched monosaccharides	FUC, NAG

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7XM2 \| pdb_00007xm2	Download File View File

Crystal structure of Keap1 Kelch domain (residues 322-609) in complex with NXPZ-2

Xu, K.

(2022) J Med Chem 65: 8289-8302

Released	2022-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)
Unique Ligands	GFD

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7XM3 \| pdb_00007xm3	Download File View File

Crystal structure of Keap1 Kelch domain (residues 322-609) in complex with 6k

Xu, K.

(2022) J Med Chem 65: 8289-8302

Released	2022-07-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)
Unique Ligands	GED

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7XM4 \| pdb_00007xm4	Download File View File

Crystal structure of Keap1 Kelch domain (residues 322-609) in complex with 6e

Xu, K.

(2022) J Med Chem 65: 8289-8302

Released	2022-07-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)
Unique Ligands	GDJ

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7XM5 \| pdb_00007xm5	Download File View File

Keap1 Kelch domain (residues 322-609) in complex with 6i

Xu, K.

(2022) J Med Chem 65: 8289-8302

Released	2022-07-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Kelch-like ECH-associated protein 1 (protein)
Unique Ligands	GCI

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7YDI \| pdb_00007ydi	Download File View File

SARS-CoV-2 Spike (6P) in complex with 3 R1-32 Fabs and 3 ACE2, focused refinement of RBD region

Liu, B., Gao, X., Li, Z., Chen, X., He, J., Chen, L., Xiong, X.

(2022) Nat Microbiol 7: 1635-1649

Released	2022-08-24
Method	ELECTRON MICROSCOPY 3.98 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of R1-32 (protein) Light chain of R1-32 (protein) Processed angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

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7YDY \| pdb_00007ydy	Download File View File

SARS-CoV-2 Spike (6P) in complex with 1 R1-32 Fab

Liu, B., Gao, X., Li, Z., Chen, X., He, J., Chen, L., Xiong, X.

(2022) Nat Microbiol 7: 1635-1649

Released	2022-08-24
Method	ELECTRON MICROSCOPY 4.75 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of R1-32 Fab (protein) Light chain of R1-32 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7YE5 \| pdb_00007ye5	Download File View File

SARS-CoV-2 Spike (6P) in complex with 2 R1-32 Fabs

Liu, B., Gao, X., Li, Z., Chen, X., He, J., Chen, L., Xiong, X.

(2022) Nat Microbiol 7: 1635-1649

Released	2022-08-24
Method	ELECTRON MICROSCOPY 6.75 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of R1-32 Fab (protein) Light chain of R1-32 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7YE9 \| pdb_00007ye9	Download File View File

SARS-CoV-2 Spike (6P) in complex with 3 R1-32 Fabs

Liu, B., Gao, X., Li, Z., Chen, X., He, J., Chen, L., Xiong, X.

(2022) Nat Microbiol 7: 1635-1649

Released	2022-08-24
Method	ELECTRON MICROSCOPY 4.17 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of R1-32 Fab (protein) Light chain of R1-32 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7YEG \| pdb_00007yeg	Download File View File

SARS-CoV-2 Spike (6P) in complex with 3 R1-32 Fabs and 3 ACE2

Liu, B., Gao, X., Li, Z., Chen, X., He, J., Chen, L., Xiong, X.

(2022) Nat Microbiol 7: 1635-1649

Released	2022-08-24
Method	ELECTRON MICROSCOPY 3.73 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein) heavy chain of R1-32 Fab (protein) light chain of R1-32 Fab (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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8ZHD \| pdb_00008zhd	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with two R1-26 Fabs

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.41 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of R1-26 Fab (protein) Light chain of R1-26 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHE \| pdb_00008zhe	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with three R1-26 Fabs

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.16 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of R1-26 Fab (protein) Light chain of R1-26 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHF \| pdb_00008zhf	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with R1-26 Fab, head-to-head aggregate

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 5.26 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of R1-26 Fab (protein) Light chain of R1-26 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHG \| pdb_00008zhg	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with R1-26 Fab, focused refinement of RBD-Fab region

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.51 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of R1-26 Fab (protein) Light chain of R1-26 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique branched monosaccharides	NAG

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8ZHH \| pdb_00008zhh	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with two H18 Fabs

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 5.55 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of H18 Fab (protein) Light chain of H18 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHI \| pdb_00008zhi	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 6.05 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of H18 Fab (protein) Light chain of H18 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHJ \| pdb_00008zhj	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C1 symmetry)

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 8.45 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of H18 Fab (protein) Light chain of H18 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHK \| pdb_00008zhk	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C3 symmetry)

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 6.3 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of H18 Fab (protein) Light chain of H18 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHL \| pdb_00008zhl	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with two H18 and two R1-32 Fabs

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.96 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of H18 Fab (protein) Heavy chain of R1-32 Fab (protein) Light chain of H18 Fab (protein) Light chain of R1-32 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHM \| pdb_00008zhm	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with three H18 and three R1-32 Fabs

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.39 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of H18 Fab (protein) Heavy chain of R1-32 Fab (protein) Light chain of H18 Fab (protein) Light chain of R1-32 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHN \| pdb_00008zhn	Download File View File

SARS-CoV-2 spike trimer (6P) in complex with three H18 and three R1-32 Fabs (one RBD rotated)

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 4.12 Å
Organisms	Enterobacteria phage T6 Homo sapiens Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Heavy chain of H18 Fab (protein) Heavy chain of R1-32 Fab (protein) Light chain of H18 Fab (protein) Light chain of R1-32 Fab (protein) Spike glycoprotein,Fibritin,Expression Tag (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8ZHO \| pdb_00008zho	Download File View File

SARS-CoV-2 S1 in complex with H18 and R1-32 Fab

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H18 Fab (protein) Heavy chain of R1-32 Fab (protein) Light chain of H18 Fab (protein) Light chain of R1-32 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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8ZHP \| pdb_00008zhp	Download File View File

Dimer of SARS-CoV-2 S1 in complex with H18 and R1-32 Fabs

Yan, Q., Gao, X., Liu, B., Hou, R., He, P., Li, Z., Chen, Q., Wang, J., He, J., Chen, L., Zhao, J., Xiong, X.

(2024) Nat Commun 15: 7585-7585

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.66 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H18 Fab (protein) Heavy chain of R1-32 Fab (protein) Light chain of H18 Fab (protein) Light chain of R1-32 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

7FBJ | pdb_00007fbj

7FBK | pdb_00007fbk

7XM2 | pdb_00007xm2

7XM3 | pdb_00007xm3

7XM4 | pdb_00007xm4

7XM5 | pdb_00007xm5

7YDI | pdb_00007ydi

7YDY | pdb_00007ydy

7YE5 | pdb_00007ye5

7YE9 | pdb_00007ye9

7YEG | pdb_00007yeg

8ZHD | pdb_00008zhd

8ZHE | pdb_00008zhe

8ZHF | pdb_00008zhf

8ZHG | pdb_00008zhg

8ZHH | pdb_00008zhh

8ZHI | pdb_00008zhi

8ZHJ | pdb_00008zhj

8ZHK | pdb_00008zhk

8ZHL | pdb_00008zhl

8ZHM | pdb_00008zhm

8ZHN | pdb_00008zhn

8ZHO | pdb_00008zho

8ZHP | pdb_00008zhp