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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jones, P.S."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Homo sapiens (14)
	Hepacivirus hominis (2)
	Bos taurus (1)
	Stenotrophomonas maltophilia (1)

Taxonomy

	Eukaryota (14)
	Riboviria (2)
	Riboviria (RNA viruses and viroids) (2)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (9)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (1)
	2010 - 2014 (6)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (13)
	Transferases (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (1)
	Dihedral (1)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (3)
	Artifacts (1)

AllSelected

1 to 17 of 17 Structures

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1N1L \| pdb_00001n1l	Download File View File

CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND INHIBITOR (GW472467X)

Andrews, D.M., Chaignot, H., Coomber, B.A., Good, A.C., Hind, S.L., Jones, P.S., Mill, G., Robinson, J.E., Skarzynski, T., Slater, M.J., Somers, D.O.N.

(2002) Org Lett 4: 4479-4482

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Hepacivirus hominis
Macromolecule	HCV NS3 SERINE PROTEASE (protein) NS4A COFACTOR (protein)
Unique Ligands	TRL, ZN

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1RTL \| pdb_00001rtl	Download File View File

CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN: NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND PYRROLIDINE-5,5-TRANSLACTAM INHIBITOR

Skarzynski, T., Somers, D.O.N.

(2003) Org Lett 5: 4627-4630

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Hepacivirus hominis
Macromolecule	NS3 protease/helicase (protein) NS4A COFACTOR (protein)
Unique Ligands	CPX, ZN

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3D3P \| pdb_00003d3p	Download File View File

Crystal structure of PDE4B catalytic domain in complex with a pyrazolopyridine inhibitor

Somers, D.O., Neu, M.

(2008) Bioorg Med Chem Lett 18: 4237-4241

Released	2009-05-19
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4B (protein)
Unique Ligands	20A, ARS, MG, ZN

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3N4C \| pdb_00003n4c	Download File View File

6-Phenyl-1H-imidazo[4,5-c]pyridine-4-carbonitrile as cathepsin S inhibitors

Fradera, X., Uitdehaag, J.C.M., van Zeeland, M.

(2010) Bioorg Med Chem Lett 20: 4350-4354

Released	2011-04-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin S (protein)
Unique Ligands	DMS, EF3, SO4

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3O56 \| pdb_00003o56	Download File View File

Catalytic domain of human phosphodiesterase 4b2b in complex with a 5-heterocycle pyrazolopyridine inhibitor

Somers, D.O., Neu, M.

(2010) Bioorg Med Chem Lett 20: 5803-5806

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4B (protein)
Unique Ligands	ARS, GOL, MG, ZG1, ZN

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3O57 \| pdb_00003o57	Download File View File

Catalytic domain of human phosphodiesterase 4b2b in complex with a 5-heterocycle pyrazolopyridine inhibitor

Somers, D.O., Neu, M.

(2010) Bioorg Med Chem Lett 20: 5803-5806

Released	2011-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4B (protein)
Unique Ligands	ARS, GOL, MG, ZG2, ZN

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3OVX \| pdb_00003ovx	Download File View File

Cathepsin S in complex with a covalent inhibitor with an aldehyde warhead

Fradera, X., van Zeeland, M., Uitdehaag, J.C.M.

(2010) Bioorg Med Chem Lett 20: 6890-6894

Released	2010-12-22
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin S (protein)
Unique Ligands	DMS, O64

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3OVZ \| pdb_00003ovz	Download File View File

Cathepsin K in complex with a covalent inhibitor with a ketoamide warhead

Fradera, X., van Zeeland, M., Uitdehaag, J.C.M.

(2010) Bioorg Med Chem Lett 20: 6890-6894

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin K (protein)
Unique Ligands	O96, SO4

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4AXA \| pdb_00004axa	Download File View File

Structure of PKA-PKB chimera complexed with (1S)-2-amino-1-(4- chlorophenyl)-1-(4-(1H-pyrazol-4-yl)phenyl)ethan-1-ol

Davies, T.G., Yap, T.A., Walton, M.I., Grimshaw, K.M., tePoele, R.H., Eve, P.D., Valenti, M.R., deHavenBrandon, A.K., Martins, V., Zetterlund, A., Heaton, S.P., Heinzmann, K., Jones, P.S., Feltell, R.E., Reule, M., Woodhead, S.J., Lyons, J.F., Raynaud, F.I., Eccles, S.A., Workman, P., Thompson, N.T., Garrett, M.D.

(2012) Clin Cancer Res 18: 3912

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA (protein) CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA (protein)
Unique Ligands	RKD

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7AFZ \| pdb_00007afz	Download File View File

L1 metallo-b-lactamase with compound EBL-1306

Hinchliffe, P., Spencer, J., Brem, J.

(2022) Nat Chem 14: 15-24

Released	2021-10-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	RBW, SO4, ZN

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8B7H \| pdb_00008b7h	Download File View File

Crystal structure of human Gremlin-1 in complex with Fab

Schulze, M.-S., Martinez-Fleites, C.

(2023) MAbs 15: 2289681-2289681

Released	2023-12-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Fab antibody fragment (heavy chain) (protein) Fab antibody fragment (light chain) (protein) Gremlin-1 (protein)

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8C8B \| pdb_00008c8b	Download File View File

Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 48).

Yosaatmadja, Y., Newman, J.A., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.

(2024) Chem Sci 15: 8227-8241

Released	2024-01-31
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	DNA cross-link repair 1A protein (protein)
Unique Ligands	U1L, ZN

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8C8D \| pdb_00008c8d	Download File View File

Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 44).

Yosaatmadja, Y., Newman, J.A., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.

(2024) Chem Sci 15: 8227-8241

Released	2024-01-31
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	DNA cross-link repair 1A protein (protein)
Unique Ligands	U2C, ZN

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8C8S \| pdb_00008c8s	Download File View File

Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 21).

Yosaatmadja, Y., Newman, J.A., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.

(2024) Chem Sci 15: 8227-8241

Released	2024-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DNA cross-link repair 1A protein (protein)
Unique Ligands	U2O, ZN

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8CEW \| pdb_00008cew	Download File View File

Crystal structure of human DNA cross-link repair 1A in complex with N-hydroxyimide inhibitor H1

Newman, J.A., Yosaatmadja, Y., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.

(2024) Chem Sci 15: 8227-8241

Released	2024-02-21
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	DNA cross-link repair 1A protein (protein)
Unique Ligands	DMS, NI, UFI, ZN

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8CF0 \| pdb_00008cf0	Download File View File

Crystal structure of human DNA cross-link repair 1A in complex with quinoxalinedione inhibitor H2

Newman, J.A., Yosaatmadja, Y., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.

(2024) Chem Sci 15: 8227-8241

Released	2024-02-21
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	DNA cross-link repair 1A protein (protein)
Unique Ligands	DMS, NI, UF3

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8CG9 \| pdb_00008cg9	Download File View File

Crystal structure of human DNA cross-link repair 1A in complex with a cyclic N-hydroxyurea inhibitor

Newman, J.A., Yosaatmadja, Y., Baddock, H.T., Bielinski, M., von Delft, F., Bountra, C., McHugh, P.J., Schofield, C.J., Gileadi, O.

(2024) Chem Sci 15: 8227-8241

Released	2024-02-21
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	DNA cross-link repair 1A protein (protein)
Unique Ligands	NI, R3Z, SO4, XOB, ZN

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1N1L | pdb_00001n1l

CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND INHIBITOR (GW472467X)

1RTL | pdb_00001rtl

CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN: NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND PYRROLIDINE-5,5-TRANSLACTAM INHIBITOR

3D3P | pdb_00003d3p

Crystal structure of PDE4B catalytic domain in complex with a pyrazolopyridine inhibitor

3N4C | pdb_00003n4c

6-Phenyl-1H-imidazo[4,5-c]pyridine-4-carbonitrile as cathepsin S inhibitors

3O56 | pdb_00003o56

Catalytic domain of human phosphodiesterase 4b2b in complex with a 5-heterocycle pyrazolopyridine inhibitor

3O57 | pdb_00003o57

Catalytic domain of human phosphodiesterase 4b2b in complex with a 5-heterocycle pyrazolopyridine inhibitor

3OVX | pdb_00003ovx

Cathepsin S in complex with a covalent inhibitor with an aldehyde warhead

3OVZ | pdb_00003ovz

Cathepsin K in complex with a covalent inhibitor with a ketoamide warhead

4AXA | pdb_00004axa

Structure of PKA-PKB chimera complexed with (1S)-2-amino-1-(4- chlorophenyl)-1-(4-(1H-pyrazol-4-yl)phenyl)ethan-1-ol

7AFZ | pdb_00007afz

L1 metallo-b-lactamase with compound EBL-1306

8B7H | pdb_00008b7h

Crystal structure of human Gremlin-1 in complex with Fab

8C8B | pdb_00008c8b

Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 48).

8C8D | pdb_00008c8d

Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 44).

8C8S | pdb_00008c8s

Crystal structure of human DNA cross-link repair 1A in complex with hydroxamic acid inhibitor (compound 21).

8CEW | pdb_00008cew

Crystal structure of human DNA cross-link repair 1A in complex with N-hydroxyimide inhibitor H1

8CF0 | pdb_00008cf0

Crystal structure of human DNA cross-link repair 1A in complex with quinoxalinedione inhibitor H2

8CG9 | pdb_00008cg9

Crystal structure of human DNA cross-link repair 1A in complex with a cyclic N-hydroxyurea inhibitor

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1N1L | pdb_00001n1l

1RTL | pdb_00001rtl

3D3P | pdb_00003d3p

3N4C | pdb_00003n4c

3O56 | pdb_00003o56

3O57 | pdb_00003o57

3OVX | pdb_00003ovx

3OVZ | pdb_00003ovz

4AXA | pdb_00004axa

7AFZ | pdb_00007afz

8B7H | pdb_00008b7h

8C8B | pdb_00008c8b

8C8D | pdb_00008c8d

8C8S | pdb_00008c8s

8CEW | pdb_00008cew

8CF0 | pdb_00008cf0

8CG9 | pdb_00008cg9