RCSB PDB: Search

AllSelected

2BVR \| pdb_00002bvr	Download File View File

Human thrombin complexed with fragment-based small molecules occupying the S1 pocket

Neumann, T., Junker, H.-D., Keil, O., Burkert, K., Ottleben, H., Gamer, J., Sekul, R., Deppe, H., Feurer, A., Tomandl, D., Metz, G.

(2005) Lett Drug Des Discov 2: 590-594

Released	2006-10-25
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA THROMBIN (protein) HIRUDIN VARIANT-2 (protein)
Unique Ligands	4CP

Explore in 3D

2BVS \| pdb_00002bvs	Download File View File

Human thrombin complexed with fragment-based small molecules occupying the S1 pocket

Neumann, T., Junker, H.-D., Keil, O., Burkert, K., Ottleben, H., Gamer, J., Sekul, R., Deppe, H., Feurer, A., Tomandl, D., Metz, G.

(2005) Lett Drug Des Discov 2: 590-594

Released	2006-10-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA THROMBIN (protein) HIRUDIN VARIANT-2 (protein)
Unique Ligands	2CE

Explore in 3D

2BVX \| pdb_00002bvx	Download File View File

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

Bulat, S., Bosio, S., Grabowski, E., Papadopoulos, M.A., Cerezo-Galvez, S., Rosenbaum, C., Matassa, V.G., Ott, I., Metz, G., Schamberger, J., Sekul, R., Feurer, A.

(2006) Lett Drug Des Discov 3: 289-292

Released	2006-10-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA THROMBIN (protein) HIRUDIN VARIANT-2 (protein)
Unique Ligands	5CB

Explore in 3D

2BXT \| pdb_00002bxt	Download File View File

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

Bulat, S., Bosio, S., Grabowski, E., Papadopoulos, M.A., Cerezo-Galvez, S., Rosenbaum, C., Matassa, V.G., Ott, I., Metz, G., Schamberger, J., Sekul, R., Feurer, A.

(2006) Lett Drug Des Discov 3: 289

Released	2006-10-26
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA THROMBIN (protein) HIRUDIN VARIANT-2 (protein)
Unique Ligands	C2D

Explore in 3D

2BXU \| pdb_00002bxu	Download File View File

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

Bulat, S., Bosio, S., Grabowski, E., Papadopoulos, M.A., Cerezo-Galvez, S., Rosenbaum, C., Matassa, V.G., Ott, I., Metz, G., Schamberger, J., Sekul, R., Feurer, A.

(2006) Lett Drug Des Discov 3: 289

Released	2006-10-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA THROMBIN (protein) HIRUDIN (protein)
Unique Ligands	C1D

Explore in 3D

3I7G \| pdb_00003i7g	Download File View File

MMP-13 in complex with a non zinc-chelating inhibitor

Farrow, N.A.

(2009) Bioorg Med Chem Lett 19: 5321-5324

Released	2009-09-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Collagenase 3 (protein)
Unique Ligands	732, CA, FMT, ZN

Explore in 3D

3I7I \| pdb_00003i7i	Download File View File

MMP-13 in complex with a non zinc-chelating inhibitor

Farrow, N.A., Margarit, S.M.

(2009) Bioorg Med Chem Lett 19: 5321-5324

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.208 Å
Organisms	Homo sapiens
Macromolecule	Collagenase 3 (protein)
Unique Ligands	518, CA, ZN

2BVR | pdb_00002bvr

Human thrombin complexed with fragment-based small molecules occupying the S1 pocket

2BVS | pdb_00002bvs

Human thrombin complexed with fragment-based small molecules occupying the S1 pocket

2BVX | pdb_00002bvx

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

2BXT | pdb_00002bxt

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

2BXU | pdb_00002bxu

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

3I7G | pdb_00003i7g

MMP-13 in complex with a non zinc-chelating inhibitor

3I7I | pdb_00003i7i

MMP-13 in complex with a non zinc-chelating inhibitor

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2BVR | pdb_00002bvr

Human thrombin complexed with fragment-based small molecules occupying the S1 pocket

2BVS | pdb_00002bvs

Human thrombin complexed with fragment-based small molecules occupying the S1 pocket

2BVX | pdb_00002bvx

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

2BXT | pdb_00002bxt

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

2BXU | pdb_00002bxu

Design and Discovery of Novel, Potent Thrombin Inhibitors with a Solubilizing Cationic P1-P2-Linker

3I7G | pdb_00003i7g

MMP-13 in complex with a non zinc-chelating inhibitor

3I7I | pdb_00003i7i

MMP-13 in complex with a non zinc-chelating inhibitor