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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Herledan, A."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (7)
	Homo sapiens (6)
	Mycobacterium tuberculosis (6)
	Escherichia coli K-12 (3)
	synthetic construct (3)
	Severe acute respiratory syndrome coronavirus 2 (2)

Taxonomy

	Bacteria (16)
	Eukaryota (6)
	other sequences (3)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (10)
	2.0 - 2.5 (3)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (14)
	2020 - 2024 (8)

Enzyme Classification Name

Hydrolases (8)

Membrane Protein Annotation

	MemProtMD (3)
	PDBTM (3)
	mpstruc (3)

Symmetry Type

	Cyclic (16)
	Asymmetric (9)

SCOP Classification

All alpha proteins (6)

AllSelected

1 to 24 of 24 Structures

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4GSF \| pdb_00004gsf	Download File View File

The structure analysis of cysteine free insulin degrading enzyme (ide) with (s)-2-{2-[carboxymethyl-(3-phenyl-propionyl)-amino]-acetylamino}-3-(3h-imidazol-4-yl)-propionic acid methyl ester

Guo, Q., Deprez-Poulain, R., Deprez, B., Tang, W.J.

(2015) Eur J Med Chem 90: 547-567

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Insulin-degrading enzyme (protein)
Unique Ligands	MGH, ZN

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4IFH \| pdb_00004ifh	Download File View File

Crystal structure of human insulin degrading enzyme (IDE) in complex with compound BDM44619

Liang, W.G., Guo, Q., Deprez, R., Deprez, B., Tang, W.

(2015) Nat Commun 6: 8250-8250

Released	2013-12-18
Method	X-RAY DIFFRACTION 3.286 Å
Organisms	Homo sapiens
Macromolecule	Insulin-degrading enzyme (protein)
Unique Ligands	1EF, ZN

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4NXO \| pdb_00004nxo	Download File View File

Crystal Structure of Insulin Degrading Enzyme in complex with BDM44768

Liang, W.G., Deprez, R., Deprez, B., Tang, W.

(2015) Nat Commun 6: 8250-8250

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Homo sapiens
Macromolecule	Insulin-degrading enzyme (protein)
Unique Ligands	1PE, 2H7, DIO, EDO, EPE, PEG, ZN

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4QIA \| pdb_00004qia	Download File View File

Crystal structure of human insulin degrading enzyme (ide) in complex with inhibitor N-benzyl-N-(carboxymethyl)glycyl-L-histidine

Guo, Q., Deprez-Poulain, R., Deprez, B., Tang, W.J.

(2015) Eur J Med Chem 90: 547-567

Released	2015-05-13
Method	X-RAY DIFFRACTION 3.202 Å
Organisms	Homo sapiens
Macromolecule	Insulin-degrading enzyme (protein)
Unique Ligands	33K, ZN

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4RE9 \| pdb_00004re9	Download File View File

Crystal structure of human insulin degrading enzyme (IDE) in complex with compound 71290

Liang, W.G., Deprez, R., Deprez, B., Tang, W.J.

(2015) Nat Commun 6: 8250-8250

Released	2015-09-30
Method	X-RAY DIFFRACTION 2.908 Å
Organisms	Homo sapiens
Macromolecule	Insulin-degrading enzyme (protein)
Unique Ligands	1PE, 3M9, EDO, EPE, PEG, ZN

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5NIM \| pdb_00005nim	Download File View File

EthR complex

Pohl, E., Tatum, N.J., Cole, J.C., Baulard, A.R.

(2017) Org Biomol Chem 15: 10245-10255

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	HTH-type transcriptional regulator EthR (protein)
Unique Ligands	8YE, SO4

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5NIO \| pdb_00005nio	Download File View File

EthR complex

Pohl, E., Tatum, N.J., Cole, J.C., Baulard, A.R.

(2017) Org Biomol Chem 15: 10245-10255

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	HTH-type transcriptional regulator EthR (protein)
Unique Ligands	8YH, SO4

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5NIZ \| pdb_00005niz	Download File View File

EthR complex

Pohl, E., Tatum, N.J., Cole, J.C., Baulard, A.R.

(2017) Org Biomol Chem 15: 10245-10255

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	HTH-type transcriptional regulator EthR (protein)
Unique Ligands	8YT, SO4

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5NJ0 \| pdb_00005nj0	Download File View File

EthR complex

Pohl, E., Tatum, N.J., Cole, J.C., Baulard, A.R.

(2017) Org Biomol Chem 15: 10245-10255

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	HTH-type transcriptional regulator EthR (protein)
Unique Ligands	8YW, SO4

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6HRW \| pdb_00006hrw	Download File View File

EthR2 in complex with compound 1 (BDM14272)

Wintjens, R., Wohlkonig, A., Tanina, A.

(2019) Eur J Med Chem 167: 426-438

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable transcriptional regulatory protein (protein)
Unique Ligands	GNK

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6HRX \| pdb_00006hrx	Download File View File

EthR2 in complex with compound 2 (BDM72201)

Wintjens, R., Wohlkonig, A., Tanina, A.

(2019) Eur J Med Chem 167: 426-438

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable transcriptional regulatory protein (protein)
Unique Ligands	GO8

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6HRY \| pdb_00006hry	Download File View File

EthR2 in complex with compound 3 (BDM72719)

Wintjens, R., Wohlkonig, A., Tanina, A.

(2019) Eur J Med Chem 167: 426-438

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable transcriptional regulatory protein (protein)
Unique Ligands	GOE

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6HRZ \| pdb_00006hrz	Download File View File

EthR2 in complex with compound 4 (BDM72170)

Wintjens, R., Wohlkonig, A., Tanina, A.

(2019) Eur J Med Chem 167: 426-438

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable transcriptional regulatory protein (protein)
Unique Ligands	GO2

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6HS0 \| pdb_00006hs0	Download File View File

EthR2 in complex with compound 5 (BDM71847)

Wintjens, R., Wohlkonig, A., Tanina, A.

(2019) Eur J Med Chem 167: 426-438

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable transcriptional regulatory protein (protein)
Unique Ligands	GNW

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6HS1 \| pdb_00006hs1	Download File View File

EthR2 in complex with compound 9 (BDM76060)

Wintjens, R., Wohlkonig, A., Tanina, A.

(2019) Eur J Med Chem 167: 426-438

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable transcriptional regulatory protein (protein)
Unique Ligands	GO5

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6HS2 \| pdb_00006hs2	Download File View File

EthR2 in complex with compound 31 (BDM76150)

Wintjens, R., Wohlkonig, A., Tanina, A.

(2019) Eur J Med Chem 167: 426-438

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable transcriptional regulatory protein (protein)
Unique Ligands	GNZ

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6R1P \| pdb_00006r1p	Download File View File

EthR ligand complex

Pohl, E., Tatum, N.

(2019) J Phys Chem Lett 10: 2244-2249

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	HTH-type transcriptional regulator EthR (protein)
Unique Ligands	JPH

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6R1S \| pdb_00006r1s	Download File View File

EthR ligand complex

Pohl, E., Tatum, N.

(2019) J Phys Chem Lett 10: 2244-2249

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	HTH-type transcriptional regulator EthR (protein)
Unique Ligands	JPK

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7NTQ \| pdb_00007ntq	Download File View File

Crystal structure of the SARS-CoV-2 Main Protease complexed with N-(pyridin-3-ylmethyl)thioformamide

Dupre, E., Villeret, V., Hanoulle, X.

(2023) Eur J Med Chem 250: 115186-115186

Released	2022-03-02
Method	X-RAY DIFFRACTION 1.495 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	35J, DMS, FMT, NA

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7OUK \| pdb_00007ouk	Download File View File

BDM88855 inhibitor bound to the transmembrane domain of AcrB

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1K8, C14, D10, DDQ, DDR, EDO, GOL, LMT, LPX, OCT, SO4

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7OUL \| pdb_00007oul	Download File View File

BDM88832 inhibitor bound to the transmembrane domain of AcrB-R971A

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1KE, C14, D12, DDQ, EDO, GOL, LMT, LPX, SO4

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7OUM \| pdb_00007oum	Download File View File

BDM88855 inhibitor bound to the transmembrane domain of AcrB-R971A

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1K8, C14, D10, DDQ, EDO, GOL, LMT, LPX, OCT, SO4

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7SH0 \| pdb_00007sh0	Download File View File

CRYSTAL STRUCTURE OF ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2 (ERAP2) COMPLEX WITH A HIGHLY SELECTIVE AND POTENT SMALL MOLECULE

Li, L., Bouvier, M.

(2022) Angew Chem Int Ed Engl 61: e202203560-e202203560

Released	2022-07-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Endoplasmic reticulum aminopeptidase 2 (protein)
Unique Ligands	EPE, GIY, MES, NA, ZN

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8AEB \| pdb_00008aeb	Download File View File

SARS-CoV-2 Main Protease complexed with N-(pyridin-3-ylmethyl)thioformamide

Hanoulle, X., Charton, J., Deprez, B.

(2023) Eur J Med Chem 250: 115186-115186

Released	2023-03-15
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	35J, DMS, NA

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4GSF | pdb_00004gsf

4IFH | pdb_00004ifh

4NXO | pdb_00004nxo

4QIA | pdb_00004qia

4RE9 | pdb_00004re9

5NIM | pdb_00005nim

5NIO | pdb_00005nio

5NIZ | pdb_00005niz

5NJ0 | pdb_00005nj0

6HRW | pdb_00006hrw

6HRX | pdb_00006hrx

6HRY | pdb_00006hry

6HRZ | pdb_00006hrz

6HS0 | pdb_00006hs0

6HS1 | pdb_00006hs1

6HS2 | pdb_00006hs2

6R1P | pdb_00006r1p

6R1S | pdb_00006r1s

7NTQ | pdb_00007ntq

7OUK | pdb_00007ouk

7OUL | pdb_00007oul

7OUM | pdb_00007oum

7SH0 | pdb_00007sh0

8AEB | pdb_00008aeb