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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Goldstone, D.C."

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Search Summary

This query matches 69 Structures.

Refinements

Structure Determination Methodology

experimental (69)

Scientific Name of Source Organism

	Homo sapiens (16)
	Gallus gallus (13)
	Saccharomyces cerevisiae (4)
	Trichomonas vaginalis (4)
	Human immunodeficiency virus 1 (3)
	Human spumaretrovirus (3)
	Macaca mulatta (3)
	Butyrivibrio proteoclasticus (2)
	Butyrivibrio proteoclasticus B316 (2)
	Cydia pomonella granulosis virus (isolate Mexican) (2)

More...

Taxonomy

	Eukaryota (46)
	Riboviria (14)
	Bacteria (9)
	Viruses incertae sedis (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (62)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (69)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (17)
	2.0 - 2.5 (16)
	2.5 - 3.0 (11)
	3.0 - 3.5 (4)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (16)
	2015 - 2019 (28)
	2020 - 2024 (23)

Enzyme Classification Name

	Hydrolases (21)
	Oxidoreductases (6)
	Transferases (5)
	Isomerases (2)
	Ligases (1)
	Lyases (1)

Symmetry Type

	Cyclic (27)
	Asymmetric (31)
	Dihedral (10)
	Icosahedral (2)

SCOP Classification

	All alpha proteins (5)
	Artifacts (6)
	Alpha and beta proteins (a+b) (17)
	Alpha and beta proteins (a/b) (2)
	Small proteins (1)
	All beta proteins (1)

AllSelected

1 to 25 of 69 Structures

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2V4X \| pdb_00002v4x	Download File View File

Crystal Structure of Jaagsiekte Sheep Retrovirus Capsid N-terminal domain

Mortuza, G.B., Goldstone, D.C., Pashley, C., Haire, L.F., Palmarini, M., Taylor, W.R., Stoye, J.P., Taylor, I.A.

(2009) J Mol Biology 386: 1179

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Jaagsiekte sheep retrovirus
Macromolecule	CAPSID PROTEIN P27 (protein)

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2WTM \| pdb_00002wtm	Download File View File

Est1E from Butyrivibrio proteoclasticus

Goldstone, D.C., Arcus, V.L.

(2010) Proteins 78: 1457

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Butyrivibrio proteoclasticus
Macromolecule	EST1E (protein)
Unique Ligands	GOL, PO4

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2WTN \| pdb_00002wtn	Download File View File

Ferulic Acid bound to Est1E from Butyrivibrio proteoclasticus

Goldstone, D.C., Arcus, V.L.

(2010) Proteins 78: 1457

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Butyrivibrio proteoclasticus
Macromolecule	EST1E (protein)
Unique Ligands	FER, GOL, PO4

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2X1A \| pdb_00002x1a	Download File View File

Structure of Rna15 RRM with RNA bound (G)

Pancevac, C., Goldstone, D.C., Ramos, A., Taylor, I.A.

(2010) Nucleic Acids Res 38: 3119

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	MRNA 3'-END-PROCESSING PROTEIN RNA15 (protein) 5'-R(GPUPUPGP*UP)-3' (nucleic acid)
Unique Ligands	MG

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2X1B \| pdb_00002x1b	Download File View File

Structure of RNA15 RRM

Pancevac, C., Goldstone, D.C., Ramos, A., Taylor, I.A.

(2010) Nucleic Acids Res 38: 3119

Released	2010-02-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	MRNA 3'-END-PROCESSING PROTEIN RNA15 (protein)
Unique Ligands	PO4

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2X1F \| pdb_00002x1f	Download File View File

Structure of Rna15 RRM with bound RNA (GU)

Pancevac, C., Goldstone, D.C., Ramos, A., Taylor, I.A.

(2010) Nucleic Acids Res 38: 3119

Released	2010-02-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	MRNA 3'-END-PROCESSING PROTEIN RNA15 (protein) 5'-R(GPUPUPGP*UP)-3' (nucleic acid)

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2XFV \| pdb_00002xfv	Download File View File

Structure of the amino-terminal domain from the cell-cycle regulator Swi6

Smerdon, S.J., Goldstone, D.C., Taylor, I.A.

(2010) Proteins 78: 2861

Released	2010-06-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	REGULATORY PROTEIN SWI6 (protein)
Unique Ligands	ACT, CA, CAC, GOL

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2XGU \| pdb_00002xgu	Download File View File

Structure of the N-terminal domain of capsid protein from Rabbit Endogenous Lentivirus (RELIK)

Goldstone, D.C., Taylor, I.A., Robertson, L.E., Haire, L.F., Stoye, J.P.

(2010) Cell Host Microbe 8: 248

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.502 Å
Organisms	Oryctolagus cuniculus
Macromolecule	RELIK CAPSID N-TERMINAL DOMAIN (protein)
Unique Ligands	ACT

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2XGV \| pdb_00002xgv	Download File View File

Structure of the N-terminal domain of capsid protein from Rabbit Endogenous Lentivirus (RELIK)

Goldstone, D.C., Robertson, L.E., Haire, L.F., Stoye, J.P., Taylor, I.A.

(2010) Cell Host Microbe 8: 248

Released	2010-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Microcebus murinus
Macromolecule	PSIV CAPSID N-TERMINAL DOMAIN (protein)

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2XGY \| pdb_00002xgy	Download File View File

Complex of Rabbit Endogenous Lentivirus (RELIK)Capsid with Cyclophilin A

Goldstone, D.C., Robertson, L.E., Haire, L.F., Stoye, J.P., Taylor, I.A.

(2010) Cell Host Microbe 8: 248

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein) RELIK CAPSID N-TERMINAL DOMAIN (protein)
Unique Ligands	GOL

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2Y4Z \| pdb_00002y4z	Download File View File

Structure of the amino-terminal capsid restriction escape mutation N- MLV L10W

Goldstone, D.C., Holden-Dye, K., Ohkura, S., Stoye, J.P., Taylor, I.A.

(2011) PLoS Pathog 7: 2011

Released	2011-11-23
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Murine leukemia virus
Macromolecule	CAPSID PROTEIN P30 (protein)
Unique Ligands	GOL

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3BP9 \| pdb_00003bp9	Download File View File

Structure of B-tropic MLV capsid N-terminal domain

Gulnahar, M.B., Dodding, M.P., Goldstone, D.C., Haire, L.F., Stoye, J.P., Taylor, I.A.

(2008) J Mol Biology 376: 1493-1508

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Murine leukemia virus
Macromolecule	Gag protein (protein)
Unique Ligands	GOL, IPA

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3U1N \| pdb_00003u1n	Download File View File

Structure of the catalytic core of human SAMHD1

Goldstone, D.C., Ennis-Adeniran, V., Walker, P.A., Haire, L.F., Webb, M., Taylor, I.A.

(2011) Nature 480: 379-382

Released	2011-11-16
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	SAM domain and HD domain-containing protein 1 (protein)
Unique Ligands	PO4, ZN

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3U37 \| pdb_00003u37	Download File View File

An Acetyl Xylan Esterase (Est2A) from the Rumen Bacterium Butyrivibrio proteoclasticus.

Till, M., Arcus, V.

(2013) Proteins 81: 911-917

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Butyrivibrio proteoclasticus B316
Macromolecule	Acetyl-xylan esterase Est2A (protein)
Unique Ligands	ACY, GOL

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4DEV \| pdb_00004dev	Download File View File

An Acetyl Xylan Esterase (Est2A) from the Rumen Bacterium Butyrivibrio proteoclasticus.

Till, M., Arcus, V.L.

(2013) Proteins 81: 911-917

Released	2013-02-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Butyrivibrio proteoclasticus B316
Macromolecule	Acetyl-xylan esterase Est2A (protein)
Unique Ligands	ACY, CL, GOL, PEG

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4JMR \| pdb_00004jmr	Download File View File

A unique spumavirus gag N-terminal domain with functional properties of orthoretroviral Matrix and Capsid

Taylor, I.A., Goldstone, D.C., Flower, T.G., Ball, N.J.

(2013) PLoS Pathog 9: e1003376-e1003376

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human foamy virus
Macromolecule	Env protein (protein) Gag protein (protein)

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4JNH \| pdb_00004jnh	Download File View File

A unique spumavirus gag N-terminal domain with functional properties of orthoretroviral Matrix and Capsid

Taylor, I.A., Goldstone, D.C., Flower, T.G., Ball, N.J.

(2013) PLoS Pathog 9: e1003376-e1003376

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.402 Å
Organisms	Human spumaretrovirus
Macromolecule	Gag polyprotein (protein)

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4TN3 \| pdb_00004tn3	Download File View File

Structure of the BBox-Coiled-coil region of Rhesus Trim5alpha

Kirkpatrick, J.J., Stoye, J.P., Taylor, I.A., Goldstone, D.C.

(2014) Proc Natl Acad Sci U S A 111: 9609-9614

Released	2014-07-16
Method	X-RAY DIFFRACTION 3.1989 Å
Organisms	Macaca mulatta Tequatrovirus T4
Macromolecule	TRIM5/cyclophilin A fusion protein/T4 Lysozyme chimera (protein)
Unique Ligands	ZN

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5AO0 \| pdb_00005ao0	Download File View File

Crystal structure of human SAMHD1 (amino acid residues 41-583) bound to ddGTP

Schwefel, D., Taylor, I.A.

(2015) PLoS Pathog 11: 05194

Released	2015-10-14
Method	X-RAY DIFFRACTION 3.731 Å
Organisms	Homo sapiens
Macromolecule	DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1 (protein)
Unique Ligands	DG3, FE, MG

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5AO1 \| pdb_00005ao1	Download File View File

Crystal structure of human SAMHD1 (amino acid residues 115-583) bound to ddGTP

Schwefel, D., Taylor, I.A.

(2015) PLoS Pathog 11: 5194

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.545 Å
Organisms	Homo sapiens
Macromolecule	DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1 (protein)
Unique Ligands	DG3, FE, MG, SO4

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5AO2 \| pdb_00005ao2	Download File View File

Crystal structure of human SAMHD1 (amino acid residues 115-583) R164A variant bound to dGTP

Schwefel, D., Taylor, I.A.

(2015) PLoS Pathog 11: 5194

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.966 Å
Organisms	Homo sapiens
Macromolecule	DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1 (protein)
Unique Ligands	DGT, FE

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5AO3 \| pdb_00005ao3	Download File View File

Crystal structure of human SAMHD1 (amino acid residues 115-626) bound to GTP

Schwefel, D., Taylor, I.A.

(2015) PLoS Pathog 11: 5194

Released	2016-04-20
Method	X-RAY DIFFRACTION 3.004 Å
Organisms	Homo sapiens
Macromolecule	DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1 (protein)
Unique Ligands	FE, GTP, SO4

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5AO4 \| pdb_00005ao4	Download File View File

Crystal structure of in vitro phosphorylated human SAMHD1 (amino acid residues 115-626) bound to GTP

Arnold, L.H., Schwefel, D., Taylor, I.A.

(2015) PLoS Pathog 11: 5194

Released	2015-10-14
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Homo sapiens
Macromolecule	DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1 (protein)
Unique Ligands	FE, GTP

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5CWA \| pdb_00005cwa	Download File View File

Structure of Anthranilate Synthase Component I (TrpE) from Mycobacterium tuberculosis with inhibitor bound

Johnston, J.M., Bashiri, G., Evans, G.L., Lott, J.S., Baker, E.N.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2297-2308

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Anthranilate synthase component 1 (protein)
Unique Ligands	0GA, GOL, SO4, UNL