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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gianquinto, E."

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Homo sapiens (19)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (7)
	Influenza A virus (A/duck/Shantou/4610/2003(H5N1)) (4)
	Rattus norvegicus (2)
	Human immunodeficiency virus 1 (1)
	Influenza A virus (1)

Taxonomy

	Eukaryota (21)
	Riboviria (13)

Experimental Method

	X-RAY DIFFRACTION (32)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (14)
	2.0 - 2.5 (11)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (1)
	2005 - 2009 (13)
	2010 - 2014 (13)
	2020 - 2024 (4)

Enzyme Classification Name

	Oxidoreductases (6)
	Hydrolases (6)
	Transferases (3)
	Ligases (1)

Symmetry Type

	Asymmetric (29)
	Cyclic (9)

SCOP Classification

	All alpha proteins (5)
	All beta proteins (8)
	Alpha and beta proteins (a+b) (5)
	Artifacts (2)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 34 Structures

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1BE9 \| pdb_00001be9	Download File View File

THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 IN COMPLEX WITH A C-TERMINAL PEPTIDE DERIVED FROM CRIPT.

Doyle, D.A., Lee, A., Lewis, J., Kim, E., Sheng, M., Mackinnon, R.

(1996) Cell 85: 1067-1076

Released	1998-10-21
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Rattus norvegicus
Macromolecule	CRIPT (protein) PSD-95 (protein)

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1BFE \| pdb_00001bfe	Download File View File

THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95

Doyle, D.A., Lee, A., Lewis, J., Kim, E., Sheng, M., Mackinnon, R.

(1996) Cell 85: 1067-1076

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	PSD-95 (protein)

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1G9O \| pdb_00001g9o	Download File View File

FIRST PDZ DOMAIN OF THE HUMAN NA+/H+ EXCHANGER REGULATORY FACTOR

Karthikeyan, S., Leung, T., Birrane, G., Webster, G., Ladias, J.A.A.

(2001) J Mol Biology 308: 963-973

Released	2001-05-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	NHE-RF (protein)

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1KWA \| pdb_00001kwa	Download File View File

HUMAN CASK/LIN-2 PDZ DOMAIN

Daniels, D.L., Cohen, A.R., Anderson, J.M., Brunger, A.T.

(1998) Nat Struct Biol 5: 317-325

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	HCASK/LIN-2 PROTEIN (protein)
Unique Ligands	SO4

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2G19 \| pdb_00002g19	Download File View File

Cellular Oxygen Sensing: Crystal Structure of Hypoxia-Inducible Factor Prolyl Hydroxylase (PHD2)

Syed, R.S., Li, V.

(2006) Proc Natl Acad Sci U S A 103: 9814-9819

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Egl nine homolog 1 (protein)
Unique Ligands	4HG, FE2

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2G1M \| pdb_00002g1m	Download File View File

Cellular Oxygen Sensing: Crystal Structure of Hypoxia-Inducible Factor Prolyl Hydroxylase (PHD2)

Mcdonough, M.A., Schofield, C.J.

(2006) Proc Natl Acad Sci U S A 103: 9814-9819

Released	2006-06-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Egl nine homolog 1 (protein)
Unique Ligands	4HG, FE2

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2LZG \| pdb_00002lzg	Download File View File

NMR Structure of Mdm2 (6-125) with Pip-1

Michelsen, K.B., Jordan, J.B., Lewis, J., Long, A.M., Yang, E., Rew, Y., Zhou, J., Yakowec, P., Schnier, P.D., Huang, X., Poppe, L.

(2012) J Am Chem Soc 134: 17059-17067

Released	2012-11-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	13Q

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2MHS \| pdb_00002mhs	Download File View File

NMR Structure of human Mcl-1

Liu, G., Poppe, L., Aoki, K., Yamane, H., Lewis, J., Szyperski, T.

(2014) PLoS One 9: e96521-e96521

Released	2014-05-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)

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2VQZ \| pdb_00002vqz	Download File View File

Structure of the cap-binding domain of influenza virus polymerase subunit PB2 with bound m7GTP

Guilligay, D., Tarendeau, F., Resa-Infante, P., Coloma, R., Crepin, T., Sehr, P., Lewis, J., Ruigrok, R.W.H., Ortin, J., Hart, D.J., Cusack, S.

(2008) Nat Struct Mol Biol 15: 500

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Influenza A virus
Macromolecule	POLYMERASE BASIC PROTEIN 2 (protein)
Unique Ligands	MGT

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2XAB \| pdb_00002xab	Download File View File

Structure of HSP90 with an inhibitor bound

Murray, C.W., Carr, M.G., Callaghan, O., Chessari, G., Congreve, m., Cowan, S., Coyle, J.E., Downham, R., Figueroa, E., Frederickson, M., Graham, B., McMenamin, R., O'Brian, M.A., Patel, S., Phillips, T.R., Williams, G., Woodhead, A.J., Woolford, A.J.A.

(2010) J Med Chem 53: 5956

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	HEAT SHOCK PROTEIN HSP 90-ALPHA, (protein)
Unique Ligands	VHD

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2XJG \| pdb_00002xjg	Download File View File

Structure of HSP90 with small molecule inhibitor bound

Murray, C.W., Carr, M.G., Callaghan, O., Chessari, G., Congreve, M., Cowan, S., Coyle, J.E., Downham, R., Figueroa, E., Frederickson, M., Graham, B., McMenamin, R., OBrien, M.A., Patel, S., Phillips, T.R., Williams, B., Woodhead, A.J., Woolford, A.J.A.

(2010) J Med Chem 53: 5956

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	HEAT SHOCK PROTEIN HSP 90-ALPHA (protein)
Unique Ligands	XJG

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2XJJ \| pdb_00002xjj	Download File View File

Structure of HSP90 with small molecule inhibitor bound

(2010) J Med Chem 53: 5956

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	HEAT SHOCK PROTEIN HSP 90-ALPHA (protein)
Unique Ligands	GOL, L81

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2XJX \| pdb_00002xjx	Download File View File

Structure of HSP90 with small molecule inhibitor bound

(2010) J Med Chem 53: 5956

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	HEAT SHOCK PROTEIN HSP 90-ALPHA (protein)
Unique Ligands	XJX

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2Y33 \| pdb_00002y33	Download File View File

S-nitrosylated PHD2 (GSNO soaked) in complex with Zn(II) and UN9

Chowdhury, R., Clifton, I.J., Schofield, C.J.

(2011) J Mol Biology 410: 268-279

Released	2010-12-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	EGL NINE HOMOLOG 1 (protein)
Unique Ligands	UN9, ZN

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2Y34 \| pdb_00002y34	Download File View File

S-nitrosylated PHD2 (NO exposed) in complex with Fe(II) and UN9

Chowdhury, R., McDonough, M.A., Schofield, C.J.

(2011) J Mol Biology 410: 268-279

Released	2010-12-29
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	EGL NINE HOMOLOG 1 (protein)
Unique Ligands	FE2, UN9

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3DPH \| pdb_00003dph	Download File View File

HIV-1 capsid C-terminal domain mutant (L211S)

Igonet, S., Vaney, M.C., Rey, F.A.

(2008) J Biological Chem 283: 32024-32033

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 CAPSID PROTEIN (protein)

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3DS0 \| pdb_00003ds0	Download File View File

HIV-1 capsid C-terminal domain mutant (N183A) in complex with an inhibitor of particle assembly (CAI)

Igonet, S., Vaney, M.C., Rey, F.A.

(2008) J Biological Chem 283: 32024-32033

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	HIV-1 CAPSID PROTEIN (protein) Peptide inhibitor of capsid assembly (protein)

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3DS1 \| pdb_00003ds1	Download File View File

HIV-1 capsid C-terminal domain mutant (E187A) in complex with an inhibitor of particle assembly (CAI)

Vaney, M.-C., Igonet, S., Rey, F.A.

(2008) J Biological Chem 283: 32024-32033

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	HIV-1 CAPSID PROTEIN (protein) Peptide Inhibitor of capsid assembly (protein)

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3DS2 \| pdb_00003ds2	Download File View File

HIV-1 capsid C-terminal domain mutant (Y169A)

Vaney, M.-C., Igonet, S., Rey, F.A.

(2008) J Biological Chem 283: 32024-32033

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	HIV-1 CAPSID PROTEIN (protein)

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3DS3 \| pdb_00003ds3	Download File View File

HIV-1 capsid C-terminal domain mutant (Y169A) in complex with an inhibitor of particle assembly (CAI)

Igonet, S., Vaney, M.C., Rey, F.A.

(2008) J Biological Chem 283: 32024-32033

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	HIV-1 CAPSID PROTEIN (protein) Peptide inhibitor of capsid assembly (protein)

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3DS4 \| pdb_00003ds4	Download File View File

HIV-1 capsid C-terminal domain mutant (L211S) in complex with an inhibitor of particle assembly (CAI)

Igonet, S., Vaney, M.C., Rey, F.A.

(2008) J Biological Chem 283: 32024-32033

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	HIV-1 CAPSID PROTEIN (protein) Peptide inhibitor of capsid assembly (protein)

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3DS5 \| pdb_00003ds5	Download File View File

HIV-1 capsid C-terminal domain mutant (N183A)

Igonet, S., Vaney, M.C., Rey, F.A.

(2008) J Biological Chem 283: 32024-32033

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	HIV-1 CAPSID PROTEIN (protein)

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3DTJ \| pdb_00003dtj	Download File View File

HIV-1 capsid C-terminal domain mutant (E187A)

Igonet, S., Vaney, M.C., Rey, F.A.

(2008) J Biological Chem 283: 32024-32033

Released	2008-09-02
Method	X-RAY DIFFRACTION 4 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	HIV-1 capsid protein (protein)

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3HQR \| pdb_00003hqr	Download File View File

PHD2:Mn:NOG:HIF1-alpha substrate complex

Chowdhury, R., McDonough, M.A., Schofield, C.J.

(2009) Structure 17: 981-989

Released	2009-07-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Egl nine homolog 1 (protein) Hypoxia-inducible factor 1 alpha (protein)
Unique Ligands	MN, OGA

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3HQU \| pdb_00003hqu	Download File View File

PHD2:Fe:UN9:partial HIF1-alpha substrate complex

Chowdhury, R., McDonough, M.A., Schofield, C.J.

(2009) Structure 17: 981-989

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Egl nine homolog 1 (protein) Hypoxia-inducible factor 1 alpha (protein)
Unique Ligands	FE2, UN9

1 to 25 of 34 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BE9 | pdb_00001be9

1BFE | pdb_00001bfe

1G9O | pdb_00001g9o

1KWA | pdb_00001kwa

2G19 | pdb_00002g19

2G1M | pdb_00002g1m

2LZG | pdb_00002lzg

2MHS | pdb_00002mhs

2VQZ | pdb_00002vqz

2XAB | pdb_00002xab

2XJG | pdb_00002xjg

2XJJ | pdb_00002xjj

2XJX | pdb_00002xjx

2Y33 | pdb_00002y33

2Y34 | pdb_00002y34

3DPH | pdb_00003dph

3DS0 | pdb_00003ds0

3DS1 | pdb_00003ds1

3DS2 | pdb_00003ds2

3DS3 | pdb_00003ds3

3DS4 | pdb_00003ds4

3DS5 | pdb_00003ds5

3DTJ | pdb_00003dtj

3HQR | pdb_00003hqr

3HQU | pdb_00003hqu