RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Gardberg, A.S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 300 Structures.

Refinements

Structure Determination Methodology

experimental (300)

Scientific Name of Source Organism

	Burkholderia thailandensis E264 (34)
	Mycolicibacterium smegmatis MC2 155 (32)
	Mycobacterium avium 104 (30)
	Burkholderia pseudomallei 1710b (25)
	Mycobacteroides abscessus ATCC 19977 (25)
	Mycobacterium marinum M (24)
	Burkholderia pseudomallei (15)
	Homo sapiens (11)
	Mycobacterium avium subsp. paratuberculosis (11)
	Mycobacterium tuberculosis (11)

More...

Taxonomy

	Bacteria (264)
	Eukaryota (32)
	Archaea (5)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (300)
	NEUTRON DIFFRACTION (2)

Polymer Entity Type

Protein (300)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (129)
	2.0 - 2.5 (139)
	2.5 - 3.0 (16)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (51)
	2010 - 2014 (234)
	2015 - 2019 (11)
	2020 - 2024 (4)

Enzyme Classification Name

	Transferases (74)
	Lyases (47)
	Oxidoreductases (38)
	Hydrolases (37)
	Isomerases (13)
	Ligases (9)
	Translocases (1)

Symmetry Type

	Cyclic (169)
	Dihedral (102)
	Asymmetric (77)
	Tetrahedral (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (117)
	Alpha and beta proteins (a+b) (45)
	Artifacts (52)
	All beta proteins (24)
	All alpha proteins (12)
	Multi-domain proteins (alpha and beta) (8)
	Small proteins (5)

AllSelected

1 to 25 of 300 Structures

Page 1 of 12

Sort by

Explore in 3D

2IPT	Download File View File

PFA1 Fab Fragment

Gardberg, A.S., Dealwis, C.

(2007) Proc Natl Acad Sci U S A 104: 15659-15664

Released	2007-10-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	IgG2a Fab fragment Heavy Chain (protein) IgG2a Fab fragment Light Chain Kappa (protein)
Unique Ligands	ACM

Explore in 3D

2IPU	Download File View File

PFA1 Fab fragment complexed with Abeta 1-8 peptide

Gardberg, A.S., Dealwis, C.

(2007) Proc Natl Acad Sci U S A 104: 15659-15664

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	IgG2a Fab fragment Heavy Chain (protein) IgG2a Fab fragment Light Chain Kappa (protein) abeta 1-8 peptide (protein)
Unique Ligands	ACM, GOL

Explore in 3D

2IQ9	Download File View File

PFA2 FAB fragment, triclinic apo form

Gardberg, A.S., Dealwis, C.

(2007) Proc Natl Acad Sci U S A 104: 15659-15664

Released	2007-10-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	IgG2a Fab fragment PFA2 Kappa light chain (protein) IgG2a Fab fragment PFA2 heavy chain (protein)
Unique Ligands	ACM

Explore in 3D

2IQA	Download File View File

PFA2 FAB fragment, monoclinic apo form

Gardberg, A.S., Dealwis, C.

(2007) Proc Natl Acad Sci U S A 104: 15659-15664

Released	2007-10-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	IgG2a Fab fragment PFA2 Kappa light chain (protein) IgG2a Fab fragment PFA2 heavy chain (protein)
Unique Ligands	ACM, CL, GOL

Explore in 3D

2R0W	Download File View File

PFA2 FAB complexed with Abeta1-8

Gardberg, A.S., Dealwis, C.

(2007) Proc Natl Acad Sci U S A 104: 15659-15664

Released	2007-10-16
Method	X-RAY DIFFRACTION 2.503 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Amyloid beta peptide fragment (protein) IgG2a Fab fragment heavy chain, Fd portion (protein) IgG2a Fab fragment light chain (protein)
Unique Ligands	NA

Explore in 3D

2R0Z	Download File View File

PFA1 FAB complexed with GripI peptide fragment

Gardberg, A.S., Dealwis, C.

(2007) Proc Natl Acad Sci U S A 104: 15659-15664

Released	2007-10-16
Method	X-RAY DIFFRACTION 2.096 Å
Organisms	Mus musculus
Macromolecule	GripI peptide fragment (protein) IgG2a Fab fragment heavy chain, Fd portion (protein) IgG2a Fab fragment light chain (protein)
Unique Ligands	GOL

Explore in 3D

3D63	Download File View File

Crystal structure of inorganic pyrophosphatase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)

Explore in 3D

3DAH	Download File View File

2.3 A crystal structure of ribose-phosphate pyrophosphokinase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Ribose-phosphate pyrophosphokinase (protein)
Unique Ligands	AMP, PO4

Explore in 3D

3DMS	Download File View File

1.65A crystal structure of isocitrate dehydrogenase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Biochemistry 50: 8103-8106

Released	2008-07-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Burkholderia pseudomallei
Macromolecule	Isocitrate dehydrogenase [NADP] (protein)

Explore in 3D

3EIY	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound pyrophosphate

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2009) PLoS Comput Biol 5: e1000530-e1000530

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	K, NA, PEG, PG4, POP

Explore in 3D

3EIZ	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)

Explore in 3D

3EJ0	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound N-(pyridin-3-ylmethyl) aniline, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2009) PLoS Comput Biol 5: e1000530-e1000530

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	11X

Explore in 3D

3EJ2	Download File View File

Crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei with bound 5-amino-1-(4-chlorophenyl)-1h-pyrazole-4-carbonitrile, H32 crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	928

Explore in 3D

3EK2	Download File View File

Crystal structure of eonyl-(acyl carrier protein) reductase from burkholderia pseudomallei 1719b

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Enoyl-(Acyl-carrier-protein) reductase (NADH) (protein)
Unique Ligands	CL

Explore in 3D

3EZO	Download File View File

Crystal structure of acyl-carrier-protein s-malonyltransferase from burkholderia pseudomallei 1710b

SSGCID, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-11-11
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Malonyl CoA-acyl carrier protein transacylase (protein)

Explore in 3D

3F0D	Download File View File

High resolution crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphatase synthase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) J Struct Funct Genomics 12: 63-76

Released	2008-11-04
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	ZN

Explore in 3D

3F0E	Download File View File

Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) J Struct Funct Genomics 12: 63-76

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	MG, ZN

Explore in 3D

3F0F	Download File View File

Co-crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Burkholderia pseudomallei with hydrolyzed CDP

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, GOL, MG, ZN

Explore in 3D

3F0G	Download File View File

Co-crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase with CMP

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) J Struct Funct Genomics 12: 63-76

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Burkholderia pseudomallei
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, ZN

Explore in 3D

3FTP	Download File View File

Crystal structure of 3-Ketoacyl-(acyl-carrier-protein) reductase from Burkholderia pseudomallei at 2.05 A resolution

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia pseudomallei
Macromolecule	3-oxoacyl-[acyl-carrier protein] reductase (protein)

Explore in 3D

3GK0	Download File View File

Crystal structure of pyridoxal phosphate biosynthetic protein from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-03-17
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Pyridoxine 5'-phosphate synthase (protein)
Unique Ligands	DXP, PO4

Explore in 3D

3GK3	Download File View File

Crystal structure of acetoacetyl-CoA reductase from Burkholderia pseudomallei 1710b

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-03-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Acetoacetyl-CoA reductase (protein)
Unique Ligands	PO4

Explore in 3D

3GMT	Download File View File

Crystal structure of adenylate kinase from burkholderia pseudomallei

Abendroth, J., Staker, B.L., Robinson, H., Buchko, G.W., Hewitt, S.N., Napuli, A.J., Van Voorhis, W., Stacy, R., Myler, P.J., Stewart, L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2010) Biochem Biophys Res Commun 394: 1012-1017

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Adenylate kinase (protein)
Unique Ligands	SO4

Explore in 3D

3GVC	Download File View File

Crystal structure of probable short-chain dehydrogenase-reductase from Mycobacterium tuberculosis

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2015) Tuberculosis (Edinb) 95: 142-148

Released	2009-04-07
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable short-chain type dehydrogenase/reductase (protein)

Explore in 3D

3GVF	Download File View File

1.7 Angstrom crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei bound with phosphate

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2013) PLoS One 8: e53851-e53851

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Inorganic pyrophosphatase (protein)
Unique Ligands	K, NA, PEG, PGE, PO4

1 to 25 of 300 Structures

Page 1 of 12

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification