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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Frech, M."

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Homo sapiens (20)
	Severe acute respiratory syndrome coronavirus 2 (13)

Taxonomy

	Eukaryota (20)
	Riboviria (13)

Experimental Method

X-RAY DIFFRACTION (33)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (15)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (5)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (13)
	2015 - 2019 (3)
	2020 - 2024 (13)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (14)
	Hydrolases (13)
	Isomerases (6)

Symmetry Type

	Asymmetric (19)
	Cyclic (18)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	Artifacts (1)

AllSelected

1 to 25 of 33 Structures

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3I6C \| pdb_00003i6c	Download File View File

Structure-Based Design of Novel PIN1 Inhibitors (II)

Greasley, S.E., Ferre, R.A.

(2010) Bioorg Med Chem Lett 20: 2210-2214

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)
Unique Ligands	GIA

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3IK8 \| pdb_00003ik8	Download File View File

Structure-Based Design of Novel PIN1 Inhibitors (I)

Matthews, D., Greasley, S., Ferre, R.A., Parge, H.

(2009) Bioorg Med Chem Lett 19: 5613-5616

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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3IKD \| pdb_00003ikd	Download File View File

Structure-Based Design of Novel PIN1 Inhibitors (I)

Matthews, D., Greasley, S., Ferre, R., Parge, H.

(2009) Bioorg Med Chem Lett 19: 5613-5616

Released	2009-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)
Unique Ligands	J9Z

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3IKG \| pdb_00003ikg	Download File View File

Structure-Based Design of Novel PIN1 Inhibitors (I)

Parge, H., Ferre, R.A., Greasley, S., Matthews, D.

(2009) Bioorg Med Chem Lett 19: 5613-5616

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)
Unique Ligands	J8Z

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3JYJ \| pdb_00003jyj	Download File View File

Structure-Based Design of Novel PIN1 Inhibitors (II)

Greasley, S.E., Ferre, R.A.

(2010) Bioorg Med Chem Lett 20: 2210-2214

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)
Unique Ligands	JZI

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3RWP \| pdb_00003rwp	Download File View File

Discovery of a Novel, Potent and Selective Inhibitor of 3-Phosphoinositide Dependent Kinase (PDK1)

Greasley, S.E., Hickey, M., Ferre, R.-A., Krauss, M., Cronin, C.

(2011) J Med Chem 54: 8490-8500

Released	2011-11-16
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	ABQ, GOL, SO4

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3RWQ \| pdb_00003rwq	Download File View File

Discovery of a Novel, Potent and Selective Inhibitor of 3-Phosphoinositide Dependent Kinase (PDK1)

Kazmirski, S., Kohls, D.

(2011) J Med Chem 54: 8490-8500

Released	2011-11-16
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	3RW, GOL, SO4

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4HZR \| pdb_00004hzr	Download File View File

Crystal structure of Ack1 kinase domain

Gajiwala, K.S.

(2013) PLoS One 8: e53994-e53994

Released	2013-02-06
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Homo sapiens
Macromolecule	Activated CDC42 kinase 1 (protein)
Unique Ligands	CL, EDO, SO4

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4HZS \| pdb_00004hzs	Download File View File

Crystal structure of Ack1 kinase domain with C-terminal SH3 domain

Gajiwala, K.S.

(2013) PLoS One 8: e53994-e53994

Released	2013-02-06
Method	X-RAY DIFFRACTION 3.23 Å
Organisms	Homo sapiens
Macromolecule	Activated CDC42 kinase 1 (protein)

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4I1Z \| pdb_00004i1z	Download File View File

Crystal structure of the monomeric (V948R) form of the gefitinib/erlotinib resistant EGFR kinase domain L858R+T790M

Gajiwala, K.S., Feng, J., Ferre, R., Ryan, K., Brodsky, O., Stewart, A.

(2013) Structure 21: 209-219

Released	2013-01-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)

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4I20 \| pdb_00004i20	Download File View File

Crystal structure of monomeric (V948R) primary oncogenic mutant L858R EGFR kinase domain

Gajiwala, K.S., Feng, J., Ferre, R., Ryan, K., Brodsky, O., Stewart, A.

(2013) Structure 21: 209-219

Released	2013-01-16
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)

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4I21 \| pdb_00004i21	Download File View File

Crystal structure of L858R + T790M EGFR kinase domain in complex with MIG6 peptide

Gajiwala, K.S., Feng, J., Ferre, R., Ryan, K., Brodsky, O., Stewart, A.

(2013) Structure 21: 209-219

Released	2013-01-16
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	Homo sapiens
Macromolecule	ERBB receptor feedback inhibitor 1 (protein) Epidermal growth factor receptor (protein)

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4I22 \| pdb_00004i22	Download File View File

Structure of the monomeric (V948R)gefitinib/erlotinib resistant double mutant (L858R+T790M) EGFR kinase domain co-crystallized with gefitinib

Gajiwala, K.S., Feng, J., Ferre, R., Ryan, K., Brodsky, O., Stewart, A.

(2013) Structure 21: 209-219

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	IRE, SO4

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4I23 \| pdb_00004i23	Download File View File

Crystal structure of the wild-type EGFR kinase domain in complex with dacomitinib (soaked)

Gajiwala, K.S., Feng, J., Ferre, R., Ryan, K., Brodsky, O., Stewart, A.

(2013) Structure 21: 209-219

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	1C9

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4I24 \| pdb_00004i24	Download File View File

Structure of T790M EGFR kinase domain co-crystallized with dacomitinib

Gajiwala, K.S., Feng, J., Ferre, R., Ryan, K., Brodsky, O., Stewart, A.

(2013) Structure 21: 209-219

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	1C9

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4TYO \| pdb_00004tyo	Download File View File

PPIase in complex with a non-phosphate small molecule inhibitor.

Greasley, S.E., Ferre, R.A.

(2014) Bioorg Med Chem Lett 24: 4187-4191

Released	2014-08-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)
Unique Ligands	39X, GOL

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5U6B \| pdb_00005u6b	Download File View File

Structure of the Axl kinase domain in complex with a macrocyclic inhibitor

Gajiwala, K.S., Grodsky, N.

(2017) J Biological Chem 292: 15705-15716

Released	2017-07-26
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase receptor UFO (protein)
Unique Ligands	7YS

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5U6C \| pdb_00005u6c	Download File View File

Crystal structure of the Mer kinase domain in complex with a macrocyclic inhibitor

Gajiwala, K.S., Ferre, R.A.

(2017) J Biological Chem 292: 15705-15716

Released	2017-07-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Mer (protein)
Unique Ligands	7YS

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5UWD \| pdb_00005uwd	Download File View File

Crystal structure of EGFR kinase domain (L858R, T790M, V948R) in complex with the covalent inhibitor CO-1686

Gajiwala, K.S., Ferre, R.A.

(2017) Cell Chem Biol 24: 1388-1400.e7

Released	2017-10-18
Method	X-RAY DIFFRACTION 3.06 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein)
Unique Ligands	8OV

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7RFR \| pdb_00007rfr	Download File View File

Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor

Gajiwala, K.S., Ferre, R.A., Liu, W., Stewart, A.E.

(2021) Science 374: 1586-1593

Released	2021-11-10
Method	X-RAY DIFFRACTION 1.626 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	4W8

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7RFS \| pdb_00007rfs	Download File View File

Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor

Greasley, S.E., Ferre, R.A., Liu, W., Stewart, A.E.

(2021) Science 374: 1586-1593

Released	2021-11-10
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	4WI

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7RFU \| pdb_00007rfu	Download File View File

Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor

Greasley, S.E., Ferre, R.A., Liu, W., Stewart, A.E.

(2021) Science 374: 1586-1593

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.498 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	4YG

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7RFW \| pdb_00007rfw	Download File View File

Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor

Greasley, S.E., Ferre, R.A., Liu, W., Stewart, A.E.

(2021) Science 374: 1586-1593

Released	2021-11-10
Method	X-RAY DIFFRACTION 1.729 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	4WI

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7TLL \| pdb_00007tll	Download File View File

Structure of SARS-CoV-2 Mpro Omicron P132H in complex with Nirmatrelvir (PF-07321332)

Greasley, S.E., Ferre, R.A., Plotnikova, O., Liu, W., Stewart, A.E.

(2022) J Biological Chem 298: 101972-101972

Released	2022-01-26
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	4WI

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7U28 \| pdb_00007u28	Download File View File

Structure of SARS-CoV-2 Mpro Lambda (G15S) in complex with Nirmatrelvir (PF-07321332)

Greasley, S.E., Ferre, R.A., Plotnikova, O., Liu, W., Stewart, A.E.

(2022) J Biological Chem 298: 101972-101972

Released	2022-03-09
Method	X-RAY DIFFRACTION 1.679 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	4WI

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3I6C | pdb_00003i6c

3IK8 | pdb_00003ik8

3IKD | pdb_00003ikd

3IKG | pdb_00003ikg

3JYJ | pdb_00003jyj

3RWP | pdb_00003rwp

3RWQ | pdb_00003rwq

4HZR | pdb_00004hzr

4HZS | pdb_00004hzs

4I1Z | pdb_00004i1z

4I20 | pdb_00004i20

4I21 | pdb_00004i21

4I22 | pdb_00004i22

4I23 | pdb_00004i23

4I24 | pdb_00004i24

4TYO | pdb_00004tyo

5U6B | pdb_00005u6b

5U6C | pdb_00005u6c

5UWD | pdb_00005uwd

7RFR | pdb_00007rfr

7RFS | pdb_00007rfs

7RFU | pdb_00007rfu

7RFW | pdb_00007rfw

7TLL | pdb_00007tll

7U28 | pdb_00007u28