RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Deinum, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (9)
	Hirudo medicinalis (6)
	Cryphonectria parasitica (1)

Taxonomy

Eukaryota (10)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (1)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (2)
	2010 - 2014 (7)

Enzyme Classification Name

Hydrolases (8)

Symmetry Type

	Asymmetric (10)
	Cyclic (1)

SCOP Classification

	Multi-domain proteins (alpha and beta) (2)
	Artifacts (1)
	All beta proteins (2)

AllSelected

1 to 10 of 10 Structures

Page 1 of 1

Sort by

Explore in 3D

1A7C \| pdb_00001a7c	Download File View File

HUMAN PLASMINOGEN ACTIVATOR INHIBITOR TYPE-1 IN COMPLEX WITH A PENTAPEPTIDE

Xue, Y., Inghardt, T., Sjolin, L., Deinum, J.

(1998) Structure 6: 627-636

Released	1999-03-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	PENTAPEPTIDE (protein) PLASMINOGEN ACTIVATOR INHIBITOR TYPE 1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG, RIP

Explore in 3D

2V00 \| pdb_00002v00	Download File View File

X-ray crystal structure of endothiapepsin complexed with compound 1

Geschwindner, S., Olsson, L.L., Deinum, J., Albert, J.S., Edwards, P.D., De Beer, T., Folmer, R.H.A.

(2007) J Med Chem 50: 5903

Released	2007-12-04
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	ACT, GOL, V15

Explore in 3D

3BG8 \| pdb_00003bg8	Download File View File

Crystal structure of Factor XIa in complex with Clavatadine A

Xue, Y., Oster, L.

(2008) J Med Chem 51: 3583-3587

Released	2008-12-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XIa light chain (protein)
Unique Ligands	BEN, G0R, SO4

Explore in 3D

4AQH \| pdb_00004aqh	Download File View File

Plasminogen activator inhibitor type-1 in complex with the inhibitor AZ3976

Fjellstrom, O., Deinum, J., Sjogren, T., Johansson, C., Geschwindner, S., Nerme, V., Legnehed, A., McPheat, J., Olsson, K., Bodin, C., Gustafsson, D.

(2013) J Biological Chem 288: 873

Released	2012-11-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PLASMINOGEN ACTIVATOR INHIBITOR 1 (protein)
Unique Ligands	TB7

Explore in 3D

4BAH \| pdb_00004bah	Download File View File

Thrombin in complex with inhibitor

Xue, Y., Musil, D.

(2013) Biochemistry 52: 613

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN VARIANT-1 (protein) THROMBIN HEAVY CHAIN (protein) THROMBIN LIGHT CHAIN (protein)
Unique Ligands	MEL, NA, NAG

Explore in 3D

4BAK \| pdb_00004bak	Download File View File

Thrombin in complex with inhibitor

Xue, Y., Musil, D.

(2013) Biochemistry 52: 613

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN VARIANT-1 (protein) THROMBIN HEAVY CHAIN (protein) THROMBIN LIGHT CHAIN (protein)
Unique Ligands	M67, NA, NAG

Explore in 3D

4BAM \| pdb_00004bam	Download File View File

Thrombin in complex with inhibitor

Xue, Y., Musil, D.

(2013) Biochemistry 52: 613

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN VARIANT-1 (protein) THROMBIN HEAVY CHAIN (protein) THROMBIN LIGHT CHAIN (protein)
Unique Ligands	MM9, NA, NAG

Explore in 3D

4BAN \| pdb_00004ban	Download File View File

Thrombin in complex with inhibitor

Xue, Y., Musil, D.

(2013) Biochemistry 52: 613

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN VARIANT-2 (protein) THROMBIN HEAVY CHAIN (protein) THROMBIN LIGHT CHAIN (protein)
Unique Ligands	M6S, NA, NAG

Explore in 3D

4BAO \| pdb_00004bao	Download File View File

Thrombin in complex with inhibitor

Xue, Y., Musil, D.

(2013) Biochemistry 52: 613

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN VARIANT-2 (protein) THROMBIN HEAVY CHAIN (protein) THROMBIN LIGHT CHAIN (protein)
Unique Ligands	MVF, NA
Unique branched monosaccharides	NAG

Explore in 3D

4BAQ \| pdb_00004baq	Download File View File

Thrombin in complex with inhibitor

Xue, Y., Musil, D.

(2013) Biochemistry 52: 613

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN VARIANT-1 (protein) THROMBIN HEAVY CHAIN (protein) THROMBIN LIGHT CHAIN (protein)
Unique Ligands	M4Z, NA, NAG

1 to 10 of 10 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1A7C | pdb_00001a7c

HUMAN PLASMINOGEN ACTIVATOR INHIBITOR TYPE-1 IN COMPLEX WITH A PENTAPEPTIDE

2V00 | pdb_00002v00

X-ray crystal structure of endothiapepsin complexed with compound 1

3BG8 | pdb_00003bg8

Crystal structure of Factor XIa in complex with Clavatadine A

4AQH | pdb_00004aqh

Plasminogen activator inhibitor type-1 in complex with the inhibitor AZ3976

4BAH | pdb_00004bah

Thrombin in complex with inhibitor

4BAK | pdb_00004bak

Thrombin in complex with inhibitor

4BAM | pdb_00004bam

Thrombin in complex with inhibitor

4BAN | pdb_00004ban

Thrombin in complex with inhibitor

4BAO | pdb_00004bao

Thrombin in complex with inhibitor

4BAQ | pdb_00004baq

Thrombin in complex with inhibitor

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A7C | pdb_00001a7c

2V00 | pdb_00002v00

3BG8 | pdb_00003bg8

4AQH | pdb_00004aqh

4BAH | pdb_00004bah

4BAK | pdb_00004bak

4BAM | pdb_00004bam

4BAN | pdb_00004ban

4BAO | pdb_00004bao

4BAQ | pdb_00004baq