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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Clark, J.N."

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Streptomyces avidinii (9)
	Pseudomonas aeruginosa (7)
	Mus musculus (4)
	Streptomyces lividans (4)
	Physeter macrocephalus (3)
	Yersinia pestis (3)
	Achromobacter xylosoxidans (2)
	Pseudomonas aeruginosa PAO1 (2)
	Phanerodontia chrysosporium (1)
	Pseudoalteromonas luteoviolacea DSM 6061 (1)

More...

Taxonomy

	Bacteria (29)
	Eukaryota (8)

Experimental Method

X-RAY DIFFRACTION (33)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (9)
	1.5 - 2.0 (15)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (7)
	2015 - 2019 (8)
	2020 - 2024 (14)
	2025 - 2029 (1)

Enzyme Classification Name

Oxidoreductases (5)

Membrane Protein Annotation

	MemProtMD (4)
	PDBTM (4)
	mpstruc (3)
	OPM (2)

Symmetry Type

	Asymmetric (17)
	Dihedral (10)
	Cyclic (7)

SCOP Classification

	All beta proteins (11)
	Artifacts (9)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (5)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 33 Structures

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1PL3 \| pdb_00001pl3	Download File View File

Cytochrome Domain Of Cellobiose Dehydrogenase, M65H mutant

Rotsaert, F.A.J., Hallberg, B.M., de Vries, S., Moenne-Loccoz, P., Divne, C., Gold, M.H.

(2003) J Biological Chem 278: 33224-33231

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	Cellobiose dehydrogenase (protein)
Unique Ligands	1PG, CD, HEM
Unique branched monosaccharides	NAG

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2QDX \| pdb_00002qdx	Download File View File

P.Aeruginosa Fpr with FAD

Han, H., Schonbrunn, E.

(2007) Biochemistry 46: 12198-12211

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Ferredoxin reductase (protein)
Unique Ligands	FAD, SO4

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3ELL \| pdb_00003ell	Download File View File

Structure of the hemophore from Pseudomonas aeruginosa (HasAp)

Schonbrunn, E., Rivera, M.

(2009) Biochemistry 48: 96-109

Released	2009-01-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	HasAp (Heme acquisition protein HasAp) (protein)
Unique Ligands	HEM

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4JER \| pdb_00004jer	Download File View File

1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)

Kumar, R., Lovell, S., Battaile, K.P., Rivera, M.

(2013) Biochemistry 52: 2705-2707

Released	2013-04-24
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Yersinia pestis
Macromolecule	Hemophore HasA (protein)
Unique Ligands	NA

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4JES \| pdb_00004jes	Download File View File

1.6A resolution Apo structure of the hemophore HasA from Yersinia pestis (Hexagonal Form)

Kumar, R., Lovell, S., Battaile, K.P., Rivera, M.

(2013) Biochemistry 52: 2705-2707

Released	2013-04-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Yersinia pestis
Macromolecule	Hemophore HasA (protein)
Unique Ligands	MLI, NA, P6G, TAM

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4JET \| pdb_00004jet	Download File View File

2.2A resolution structure of Holo hemophore HasA from Yersinia pestis

Kumar, R., Lovell, S., Battaile, K.P., Rivera, M.

(2013) Biochemistry 52: 2705-2707

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Yersinia pestis
Macromolecule	Hemophore HasA (protein)
Unique Ligands	CL, HEM

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4O6Q \| pdb_00004o6q	Download File View File

0.95A resolution structure of the hemophore HasA from Pseudomonas aeruginosa (Y75A mutant)

Lovell, S., Kumar, R., Battaile, K.P., Matsumura, H., Yao, H., Rodriguez, J.C., Moenne-Loccoz, P., Rivera, M.

(2014) Biochemistry 53: 2112-2125

Released	2014-03-26
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	HasAp (protein)
Unique Ligands	FMT, HEM

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4O6S \| pdb_00004o6s	Download File View File

1.32A resolution structure of the hemophore HasA from Pseudomonas aeruginosa (H83A mutant, Zinc Bound)

Lovell, S., Kumar, R., Battaile, K.P., Matsumura, H., Yao, H., Rodriguez, J.C., Moenne-Loccoz, P., Rivera, M.

(2014) Biochemistry 53: 2112-2125

Released	2014-03-26
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	HasAp (protein)
Unique Ligands	EDO, HEM, ZN

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4O6T \| pdb_00004o6t	Download File View File

1.25A resolution structure of the hemophore HasA from Pseudomonas aeruginosa (H83A mutant, pH 5.4)

Lovell, S., Kumar, R., Battaile, K.P., Matsumura, H., Yao, H., Rodriguez, J.C., Moenne-Loccoz, P., Rivera, M.

(2014) Biochemistry 53: 2112-2125

Released	2014-03-26
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	HasAp (protein)
Unique Ligands	EDO, HEM

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4O6U \| pdb_00004o6u	Download File View File

0.89A resolution structure of the hemophore HasA from Pseudomonas aeruginosa (H83A mutant)

Lovell, S., Kumar, R., Battaile, K.P., Matsumura, H., Yao, H., Rodriguez, J.C., Moenne-Loccoz, P., Rivera, M.

(2014) Biochemistry 53: 2112-2125

Released	2014-03-26
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	HasAp (protein)
Unique Ligands	EDO, HEM

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5IQW \| pdb_00005iqw	Download File View File

1.95A resolution structure of Apo HasAp (R33A) from Pseudomonas aeruginosa

Kumar, R., Lovell, S., Battaile, K.P., Yao, H., Rivera, M.

(2016) Biochemistry 55: 2622-2631

Released	2016-04-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	ACT, CD

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5IQX \| pdb_00005iqx	Download File View File

1.05A resolution structure of Holo HasAp (R33A) from Pseudomonas aeruginosa

Kumar, R., Lovell, S., Battaile, K.P., Yao, H., Rivera, M.

(2016) Biochemistry 55: 2622-2631

Released	2016-04-20
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	HEM, MLT, NA

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5NC0 \| pdb_00005nc0	Download File View File

The 0.91 A resolution structure of the L16G mutant of cytochrome c prime from Alcaligenes xylosoxidans, complexed with nitric oxide

Strange, R., Hough, M., Antonyuk, S., Rustage, N.

(2017) Inorg Chem 56: 13205-13213

Released	2018-01-10
Method	X-RAY DIFFRACTION 0.91 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	EDO, HEC, NO, NO2, NO3, SO4

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5NGX \| pdb_00005ngx	Download File View File

The 1.06 A resolution structure of the L16G mutant of ferric cytochrome c prime from Alcaligenes xylosoxidans, complexed with nitrite

Strange, R., Hough, M., Kekelli, D., Horrell, S., Moreno Chicano, T.

(2017) Inorg Chem 56: 13205-13213

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	Cytochrome c' (protein)
Unique Ligands	GOL, HEC, NO2

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5VNU \| pdb_00005vnu	Download File View File

Nonheme Iron Replacement in a Biosynthetic Nitric Oxide Reductase Model Performing O2 Reduction to Water: Mn-bound FeBMb

Reed, J., Shi, Y., Zhu, Q., Chakraborty, S., Mirs, E.N., Petrik, I.D., Bhagi-Damodaran, A., Ross, M., Moenne-Loccoz, P., Zhang, Y., Lu, Y.

(2017) J Am Chem Soc 139: 12209-12218

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.584 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, MN

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5VRT \| pdb_00005vrt	Download File View File

Nonheme Iron Replacement in a Biosynthetic Nitric Oxide Reductase Model Performing O2 Reduction to Water: Co-bound FeBMb

Reed, J., Shi, Y., Zhu, Q., Chakraborty, S., Mirs, E.N., Petrik, I.D., Bhagi-Damodaran, A., Ross, M., Moenne-Loccoz, P., Zhang, Y., Lu, Y.

(2017) J Am Chem Soc 139: 12209-12218

Released	2017-08-16
Method	X-RAY DIFFRACTION 1.995 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	CO, HEM

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6D45 \| pdb_00006d45	Download File View File

L89S Mutant of FeBMb Sperm Whale Myoglobin

Bhagi-Damodaran, A., Mirts, E.N., Sandoval, B., Lu, Y.

(2018) Proc Natl Acad Sci U S A 115: 6195-6200

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.779 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM

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6EER \| pdb_00006eer	Download File View File

Structure of glycine-bound GoxA from Pseudoalteromonas luteoviolacea

Yukl, E.T., Avalos, D.

(2019) Biochemistry 58: 706-713

Released	2019-01-16
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Pseudoalteromonas luteoviolacea DSM 6061
Macromolecule	GoxA (protein)
Unique Ligands	EDO, MG, NA, PEG, PGE