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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Burke Jr., T.R."

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Search Summary

This query matches 47 Structures.

Refinements

Structure Determination Methodology

experimental (47)

Scientific Name of Source Organism

	Homo sapiens (37)
	Human immunodeficiency virus 1 (16)
	Saccharolobus solfataricus P2 (5)
	Rous sarcoma virus (strain Schmidt-Ruppin) (3)
	Simian T-lymphotropic virus 1 (3)
	synthetic construct (3)
	Human spumaretrovirus (2)
	Human immunodeficiency virus (1)

Taxonomy

	Eukaryota (37)
	Riboviria (24)
	Archaea (5)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (28)
	ELECTRON MICROSCOPY (19)

Polymer Entity Type

	Protein (47)
	DNA (21)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (17)
	2.0 - 2.5 (9)
	2.5 - 3.0 (13)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (6)
	2015 - 2019 (11)
	2020 - 2024 (30)

Enzyme Classification Name

	Hydrolases (33)
	Transferases (18)

Symmetry Type

	Asymmetric (23)
	Cyclic (24)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (9)
	All beta proteins (1)

AllSelected

1 to 25 of 47 Structures

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1A5V \| pdb_00001a5v	Download File View File

ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3 AND MN CATION

Lubkowski, J., Yang, F., Alexandratos, J., Wlodawer, A.

(1998) Proc Natl Acad Sci U S A 95: 4831-4836

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	MN, Y3

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1A5W \| pdb_00001a5w	Download File View File

ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3

Lubkowski, J., Yang, F., Alexandratos, J., Wlodawer, A.

(1998) Proc Natl Acad Sci U S A 95: 4831-4836

Released	1998-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	Y3

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1A5X \| pdb_00001a5x	Download File View File

ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3

Lubkowski, J., Yang, F., Alexandratos, J., Wlodawer, A.

(1998) Proc Natl Acad Sci U S A 95: 4831-4836

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rous sarcoma virus (strain Schmidt-Ruppin)
Macromolecule	INTEGRASE (protein)
Unique Ligands	Y3

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1BZC \| pdb_00001bzc	Download File View File

HUMAN PTP1B CATALYTIC DOMAIN COMPLEXED WITH TPI

Groves, M.R., Yao, Z.J., Jr Burke, T.R., Barford, D.

(1998) Biochemistry 37: 17773-17783

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PROTEIN-TYROSINE-PHOSPHATASE) (protein)
Unique Ligands	TPI

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1BZH \| pdb_00001bzh	Download File View File

Cyclic peptide inhibitor of human PTP1B

Groves, M.R., Yao, Z.J., Burke Jr., T.R., Barford, D.

(1998) Biochemistry 37: 17773-17783

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PROTEIN-TYROSINE-PHOSPHATASE 1B INHIBITOR) (protein) PROTEIN (PROTEIN-TYROSINE-PHOSPHATASE 1B) (protein)

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1BZJ \| pdb_00001bzj	Download File View File

Human ptp1b complexed with tpicooh

Groves, M.R., Yao, Z.-J., Barford Jr., D.T.B.

(1998) Biochemistry 37: 17773-17783

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PROTEIN-TYROSINE-PHOSPHATASE) (protein)
Unique Ligands	PIC

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6AX4 \| pdb_00006ax4	Download File View File

Plk-1 polo-box domain in complex with histidine N(tau)-cyclized Macrocycle 5b.

Grant, R.A., Hymel, D., Yaffe, M.B., Burke, T.R.

(2018) Bioorg Med Chem Lett 28: 3202-3205

Released	2018-09-12
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Serine/threonine-protein kinase PLK1 (protein) histidine N(tau)-cyclized Macrocycle 5b (protein)
Unique Ligands	AML

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6D3F \| pdb_00006d3f	Download File View File

Crystal Structure of the PTP epsilon D2 domain

Lountos, G.T., Raran-Kurussi, S., Zhao, B.M., Dyas, B.K., Austin, B.P., Burke Jr., T.R., Ulrich, R.G., Waugh, D.S.

(2018) Acta Crystallogr D Struct Biol 74: 1015-1026

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.271 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase epsilon (protein)

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6D4D \| pdb_00006d4d	Download File View File

Crystal structure of the PTP epsilon D1 domain

Lountos, G.T., Raran-Kurussi, S., Zhao, B.M., Dyas, B.K., Austin, B.P., Burke Jr., T.R., Ulrich, R.G., Waugh, D.S.

(2018) Acta Crystallogr D Struct Biol 74: 1015-1026

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.765 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase epsilon (protein)

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6D4F \| pdb_00006d4f	Download File View File

Crystal structure of PTP epsilon D2 domain (A455N/V457Y/E597D)

Lountos, G.T., Raran-Kurussi, S., Zhao, B.M., Dyas, B.K., Austin, B.P., Burke Jr., T.R., Ulrich, R.G., Waugh, D.S.

(2018) Acta Crystallogr D Struct Biol 74: 1015-1026

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.909 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase epsilon (protein)
Unique Ligands	1PE

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6MYZ \| pdb_00006myz	Download File View File

Crystal structure of Tdp1 catalytic domain in complex with compound XZ520

Lountos, G.T., Zhao, X.Z., Kiselev, E., Tropea, J.E., Needle, D., Burke Jr., T.R., Pommier, Y., Waugh, D.S.

To be published

Released	2019-11-06
Method	X-RAY DIFFRACTION 1.661 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein)
Unique Ligands	EDO, K7D

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6MZ0 \| pdb_00006mz0	Download File View File

Crystal structure of Tdp1 catalytic domain in complex with compound XZ530

Lountos, G.T., Zhao, X.Z., Kiselev, E., Tropea, J.E., Needle, D., Burke Jr., T.R., Pommier, Y., Waugh, D.S.

To be published

Released	2019-11-06
Method	X-RAY DIFFRACTION 1.969 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein)
Unique Ligands	EDO, K7A

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6N0D \| pdb_00006n0d	Download File View File

Crystal structure of Tdp1 catalytic domain in complex with compound XZ575

Lountos, G.T., Zhao, X.Z., Kiselev, E., Tropea, J.E., Needle, D., Burke Jr., T.R., Pommier, Y., Waugh, D.S.

To be published

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.453 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein)
Unique Ligands	EDO, K8J

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6N0N \| pdb_00006n0n	Download File View File

Crystal structure of Tdp1 catalytic domain in complex with compound XZ574

Lountos, G.T., Zhao, X.Z., Kiselev, E., Tropea, J.E., Needle, D., Burke Jr., T.R., Pommier, Y., Waugh, D.S.

To be published

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.477 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein)
Unique Ligands	DMS, EDO, KAY

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6N0O \| pdb_00006n0o	Download File View File

Crystal structure of Tdp1 catalytic domain in complex with compound XZ523

Lountos, G.T., Zhao, X.Z., Kiselev, E., Tropea, J.E., Needle, D., Burke Jr., T.R., Pommier, Y., Waugh, D.S.

To be published

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.943 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein)
Unique Ligands	EDO, K8G

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6N0R \| pdb_00006n0r	Download File View File

Crystal structure of Tdp1 catalytic domain in complex with compound XZ572

Lountos, G.T., Zhao, X.Z., Kiselev, E., Tropea, J.E., Needle, D., Burke Jr., T.R., Pommier, Y., Waugh, D.S.

To be published

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.544 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein)
Unique Ligands	DMS, EDO, K8D

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6PUT \| pdb_00006put	Download File View File

Structure of HIV cleaved synaptic complex (CSC) intasome bound with calcium

Lyumkis, D., Jozwik, I.K., Passos, D.

(2020) Science 367: 810-814

Released	2020-02-12
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Human immunodeficiency virus 1 Saccharolobus solfataricus P2
Macromolecule	Chimeric Sso7d and HIV-1 integrase (protein) viral DNA non-transferred strand (nucleic acid) viral DNA transferred strand (nucleic acid)
Unique Ligands	CA, ZN

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6PUW \| pdb_00006puw	Download File View File

Structure of HIV cleaved synaptic complex (CSC) intasome bound with magnesium and Bictegravir (BIC)

Lyumkis, D., Jozwik, I.K., Passos, D.

(2020) Science 367: 810-814

Released	2020-02-12
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Human immunodeficiency virus 1 Saccharolobus solfataricus P2
Macromolecule	Chimeric Sso7d and HIV-1 integrase (protein) viral DNA non-transferred strand (nucleic acid) viral DNA transferred strand (nucleic acid)
Unique Ligands	KLQ, MG, ZN

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6PUY \| pdb_00006puy	Download File View File

Structure of HIV cleaved synaptic complex (CSC) intasome bound with magnesium and INSTI XZ426 (compound 4d)

Lyumkis, D., Jozwik, I.K., Passos, D.

(2020) Science 367: 810-814

Released	2020-02-12
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Human immunodeficiency virus 1 Saccharolobus solfataricus P2
Macromolecule	Chimeric Sso7d and HIV-1 integrase (protein) viral DNA non-transferred strand (nucleic acid) viral DNA transferred strand (nucleic acid)
Unique Ligands	MG, OZ1, ZN

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6PUZ \| pdb_00006puz	Download File View File

Structure of HIV cleaved synaptic complex (CSC) intasome bound with magnesium and INSTI XZ446 (compound 4f)

Lyumkis, D., Jozwik, I.K., Passos, D.

(2020) Science 367: 810-814

Released	2020-02-12
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Human immunodeficiency virus 1 Saccharolobus solfataricus P2
Macromolecule	Chimeric Sso7d and HIV-1 integrase (protein) viral DNA non-transferred strand (nucleic acid) viral DNA transferred strand (nucleic acid)
Unique Ligands	MG, XXJ, ZN

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6U85 \| pdb_00006u85	Download File View File

Site-specific lysine arylation as an alternative bioconjugation strategy for chemically programmed antibodies and antibody-drug conjugates

Park, H., Rader, C.

(2019) Bioconjug Chem 30: 2889-2896

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Homo sapiens
Macromolecule	Antibody Fab heavy chain (protein) antibody Fab Light chain (protein)
Unique Ligands	GOL

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6V3K \| pdb_00006v3k	Download File View File

Structure of HIV cleaved synaptic complex (CSC) intasome bound with magnesium and INSTI XZ419 (compound 4c)

Lyumkis, D., Jozwik, I.K., Passos, D.

(2020) Science 367: 810-814

Released	2020-02-12
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Human immunodeficiency virus 1 Saccharolobus solfataricus P2
Macromolecule	Chimeric Sso7d and HIV-1 integrase (protein) viral DNA non-transferred strand (nucleic acid) viral DNA transferred strand (nucleic acid)
Unique Ligands	MG, QUW, ZN

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7ADU \| pdb_00007adu	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI XZ440 (compound 5j)

Pye, V.E., Cherepanov, P.

(2021) ACS Infect Dis 7: 1469-1482

Released	2021-03-24
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Human spumaretrovirus synthetic construct
Macromolecule	Integrase (protein) DNA (5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPCPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPGPAPAPAPTPTPCPCPAPTPGPAPCPA)-3') (nucleic acid)
Unique Ligands	GOL, MES, MG, R7K, SO4, ZN

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7ADV \| pdb_00007adv	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI XZ447 (compound 6v)

Pye, V.E., Cherepanov, P.

(2021) ACS Infect Dis 7: 1469-1482

Released	2021-03-24
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Human spumaretrovirus synthetic construct
Macromolecule	Integrase (protein) DNA (5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPCPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPGPAPAPAPTPTPCPCPAPTPGPAPCPA)-3') (nucleic acid)
Unique Ligands	GOL, MG, R7N, SO4, ZN

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7MX1 \| pdb_00007mx1	Download File View File

PLK-1 polo-box domain in complex with a high affinity macrocycle synthesized using a novel glutamic acid analog

Grant, R.A., Hymel, D., Yaffe, M.B., Burke, T.R.

(2021) Org Biomol Chem 19: 7843-7854

Released	2022-03-30
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	ACE-PRO-LEU-ALA-SER-TPO (protein) Serine/threonine-protein kinase PLK1 (protein)
Unique Ligands	ZOY

1 to 25 of 47 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A5V | pdb_00001a5v

1A5W | pdb_00001a5w

1A5X | pdb_00001a5x

1BZC | pdb_00001bzc

1BZH | pdb_00001bzh

1BZJ | pdb_00001bzj

6AX4 | pdb_00006ax4

6D3F | pdb_00006d3f

6D4D | pdb_00006d4d

6D4F | pdb_00006d4f

6MYZ | pdb_00006myz

6MZ0 | pdb_00006mz0

6N0D | pdb_00006n0d

6N0N | pdb_00006n0n

6N0O | pdb_00006n0o

6N0R | pdb_00006n0r

6PUT | pdb_00006put

6PUW | pdb_00006puw

6PUY | pdb_00006puy

6PUZ | pdb_00006puz

6U85 | pdb_00006u85

6V3K | pdb_00006v3k

7ADU | pdb_00007adu

7ADV | pdb_00007adv

7MX1 | pdb_00007mx1