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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Briney, B."

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Search Summary

This query matches 53 Structures.

Refinements

Structure Determination Methodology

experimental (53)

Scientific Name of Source Organism

	Homo sapiens (44)
	Severe acute respiratory syndrome coronavirus 2 (12)
	Human immunodeficiency virus 1 (7)
	Mammarenavirus lassaense (7)
	Macaca mulatta (4)
	Betacoronavirus England 1 (2)
	synthetic construct (2)
	Human coronavirus HKU1 (isolate N1) (1)
	Mus musculus (1)
	Oryctolagus cuniculus (1)

More...

Taxonomy

	Eukaryota (48)
	Riboviria (29)
	other sequences (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (40)
	ELECTRON MICROSCOPY (13)

Polymer Entity Type

Protein (53)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (8)
	2.5 - 3.0 (14)
	3.0 - 3.5 (10)
	3.5 - 4.0 (8)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (14)
	2020 - 2024 (37)

Symmetry Type

	Asymmetric (42)
	Cyclic (11)

SCOP Classification

	All beta proteins (9)
	Artifacts (3)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 53 Structures

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4NPY \| pdb_00004npy	Download File View File

Crystal structure of germline Fab PGT121, a putative precursor of the broadly reactive and potent HIV-1 neutralizing antibody

Julien, J.-P., Diwanji, D.C., Wilson, I.A.

(2013) PLoS Pathog 9: e1003754-e1003754

Released	2013-12-11
Method	X-RAY DIFFRACTION 1.796 Å
Organisms	Homo sapiens
Macromolecule	germline PGT121 heavy chain (protein) germline PGT121 light chain (protein)
Unique Ligands	GOL

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4RQQ \| pdb_00004rqq	Download File View File

Crystal structure of human Fab PGDM1400, a broadly reactive and potent HIV-1 neutralizing antibody

Julien, J.-P., Wilson, I.A.

(2014) Proc Natl Acad Sci U S A 111: 17624-17629

Released	2014-11-19
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Human anti-HIV-1 antibody PGDM1400 heavy chain (protein) Human anti-HIV-1 antibody PGDM1400 light chain (protein)

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5BZD \| pdb_00005bzd	Download File View File

Crystal Structure of PCDN-27A, an antibody from the PCDN family of HIV-1 antibodies

Garces, F., WILSON, I.A.

(2016) Immunity 44: 1215-1226

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	5G8 HIV Antibody heavy chain (protein) 5G8 HIV Antibody light chain (protein)
Unique Ligands	GOL

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5BZW \| pdb_00005bzw	Download File View File

Crystal Structure of PCDN-27B, an antibody from the PCDN family of HIV-1 antibodies

Garces, F., WILSON, I.A.

(2016) Immunity 44: 1215-1226

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	2B3 HIV Antibody heavy chain (protein) 2B3 HIV Antibody light chain (protein)
Unique Ligands	NAG, SO4

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5D9Q \| pdb_00005d9q	Download File View File

Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with the Broadly Neutralizing Fab PGT122 and scFv NIH45-46

Julien, J.-P., Stanfield, R.L., Ward, A.B., Wilson, I.A.

(2016) PLoS Pathog 12: e1005815-e1005815

Released	2016-08-17
Method	X-RAY DIFFRACTION 4.4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp120 (protein) Envelope glycoprotein gp41 (protein) NIH45-46 single chain Fv (protein) PGT122 heavy chain,IgG H chain (protein) PGT122 light chain,Ig lambda-3 chain C regions (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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5FEH \| pdb_00005feh	Download File View File

Crystal structure of PCT64_35B, a broadly neutralizing anti-HIV antibody

Murrell, S., Wilson, I.A.

(2017) Immunity 47: 990-1003.e9

Released	2017-08-16
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	PCT64_26 Fab heavy chain (protein) PCT64_26 Fab light chain (protein)
Unique Ligands	EDO, SO4

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5IDL \| pdb_00005idl	Download File View File

Crystal structure of the germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT8

Julien, J.P., Ereno-Orbea, J., Jardine, J.G., Schief, W.R., Wilson, I.A.

(2016) Science 351: 1458-1463

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT8 (protein)
Unique Ligands	NAG

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5IES \| pdb_00005ies	Download File View File

Crystal structure of VRC01c-HuGL2 Fab from an HIV-1 naive donor in complex with with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.16 A

Sarkar, A., Wilson, I.A.

(2016) Science 351: 1458-1463

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Homo sapiens
Macromolecule	Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8 (protein) VRC01cHuGL2 Fab heavy chain (protein) VRC01cHuGL2 Fab light chain (protein)
Unique Ligands	GOL, NAG

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5IF0 \| pdb_00005if0	Download File View File

Crystal structure of VRC01c-HuGL2 Fab from an HIV-1 naive donor in complex with with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.44 A

Sarkar, A., Wilson, I.A.

(2016) Science 351: 1458-1463

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Homo sapiens
Macromolecule	Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8 (protein) VRC01c-HuGL2 Fab light chain (protein) VRC01cHuGL2 Fab heavy chain (protein)
Unique Ligands	NAG, PO4

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5IFA \| pdb_00005ifa	Download File View File

Crystal structure of unbound VRC01c-HuGL2 Fab from an HIV-1 naive donor at 1.82 A

Sarkar, A., Wilson, I.A.

(2016) Science 351: 1458-1463

Released	2016-04-06
Method	X-RAY DIFFRACTION 1.821 Å
Organisms	Homo sapiens
Macromolecule	VRC01c-HuGL2 Fab heavy chain (protein) VRC01c-HuGL2 Fab light chain (protein)
Unique Ligands	1PE, GOL, SO4

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5KZC \| pdb_00005kzc	Download File View File

Crystal structure of an HIV-1 gp120 engineered outer domain with a Man9 glycan at position N276, in complex with broadly neutralizing antibody VRC01

Julien, J.-P., Jardine, J.G., Diwanji, D., Schief, W.R., Wilson, I.A.

(2016) PLoS Pathog 12: e1005815-e1005815

Released	2016-08-10
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	Engineered outer domain of gp120 (protein) VRC01 Fab heavy chain (protein) VRC01 Fab light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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5T3S \| pdb_00005t3s	Download File View File

HIV gp140 trimer MD39-10MUTA in complex with Fabs PGT124 and 35022

Stanfield, R.L., Wilson, I.A.

(2016) Immunity 45: 483-496

Released	2016-09-28
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6DFG \| pdb_00006dfg	Download File View File

BG505 MD39 SOSIP trimer in complex with mature BG18 fragment antigen binding

Ozorowski, G., Steichen, J.M., Schief, W.R., Ward, A.B.

(2019) Science 366:

Released	2019-11-06
Method	ELECTRON MICROSCOPY 4.42 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) mature BG18 fragment antigen binding heavy chain (protein) mature BG18 fragment antigen binding light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6DFH \| pdb_00006dfh	Download File View File

BG505 MD64 N332-GT2 SOSIP trimer in complex with germline-reverted BG18 fragment antigen binding

Ozorowski, G., Steichen, J.M., Schief, W.R., Ward, A.B.

(2019) Science 366:

Released	2019-11-06
Method	ELECTRON MICROSCOPY 3.85 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) germline-reverted BG18 fragment antigen binding heavy chain (protein) germline-reverted BG18 fragment antigen binding light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6NF5 \| pdb_00006nf5	Download File View File

BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP1 fragmentantigen binding and base-binding RM20A3 fragment antigen binding

Ozorowski, G., Torres, J.L., Steichen, J.M., Schief, W.R., Ward, A.B.

(2019) Science 366:

Released	2019-11-06
Method	ELECTRON MICROSCOPY 3.71 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Macaca mulatta
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6NFC \| pdb_00006nfc	Download File View File

BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP42 fragmentantigen binding and base-binding RM20A3 fragment antigen binding

Ozorowski, G., Torres, J.L., Ward, A.B.

(2019) Science 366:

Released	2019-11-06
Method	ELECTRON MICROSCOPY 3.43 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Macaca mulatta
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6OC7 \| pdb_00006oc7	Download File View File

HMP42 Fab in complex with Protein G

Bernard, S.M., Wilson, I.A.

(2019) Science 366:

Released	2020-02-05
Method	X-RAY DIFFRACTION 1.296 Å
Organisms	Homo sapiens Streptococcus sp. 'group G
Macromolecule	Heavy chain of HMP42 Fab (protein) Immunoglobulin G-binding protein G (protein) Light chain for HMP42 Fab (protein)

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7RA7 \| pdb_00007ra7	Download File View File

Crystal structure of rabbit anti-HIV Fab 11A

Oyen, D., Wilson, I.A.

To be published

Released	2022-07-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	11A Fab heavy chain (protein) 11A Fab light chain (protein)
Unique Ligands	1PE, SO4

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7TP3 \| pdb_00007tp3	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody K288.2

Yuan, M., Zhu, X., Wilson, I.A.

(2022) Sci Transl Med 14: eabl9605-eabl9605

Released	2022-02-23
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Macaca mulatta Severe acute respiratory syndrome coronavirus 2
Macromolecule	K288.2 heavy chain (protein) K288.2 light chain (protein) Spike protein S1 (protein)
Unique Ligands	CAC

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7TP4 \| pdb_00007tp4	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody K398.22

Yuan, M., Zhu, X., Wilson, I.A.

(2022) Sci Transl Med 14: eabl9605-eabl9605

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Macaca mulatta Severe acute respiratory syndrome coronavirus 2
Macromolecule	K398.22 heavy chain (protein) K398.22 light chain (protein) Spike protein S1 (protein)
Unique Ligands	EDO
Unique branched monosaccharides	FUC, NAG

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8DGU \| pdb_00008dgu	Download File View File

Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC25.106 isolated from a vaccinated COVID-19 convalescent

Liu, H., Wilson, I.A.

(2023) Immunity 56: 669-686.e7

Released	2023-01-25
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Antibody CC25.106 Fab heavy chain (protein) Antibody CC25.106 Fab light chain (protein) Spike protein S2' (protein)
Unique Ligands	GOL

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8DGV \| pdb_00008dgv	Download File View File

Crystal structure of MERS-CoV spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC99.103 isolated from a vaccinated COVID-19 convalescent

Liu, H., Wilson, I.A.

(2023) Immunity 56: 669-686.e7

Released	2023-01-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Betacoronavirus England 1 Homo sapiens
Macromolecule	Antibody CC99.103 Fab heavy chain (protein) Antibody CC99.103 Fab light chain (protein) Spike protein S2' (protein)

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8DGW \| pdb_00008dgw	Download File View File

Crystal structure of HCoV-HKU1 spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC95.108 isolated from a vaccinated COVID-19 convalescent

Liu, H., Wilson, I.A.

(2023) Immunity 56: 669-686.e7

Released	2023-01-25
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens Human coronavirus HKU1 (isolate N1)
Macromolecule	Antibody CC95.108 Fab heavy chain (protein) Antibody CC95.108 Fab light chain (protein) Spike protein S2' (protein)

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8DGX \| pdb_00008dgx	Download File View File

Crystal structure of MERS-CoV spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC68.109 isolated from a vaccinated COVID-19 convalescent

Liu, H., Wilson, I.A.

(2023) Immunity 56: 669-686.e7

Released	2023-01-25
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Betacoronavirus England 1 Homo sapiens
Macromolecule	Antibody CC68.109 Fab heavy chain (protein) Antibody CC68.109 Fab light chain (protein) Spike protein S2' (protein)

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8EJD \| pdb_00008ejd	Download File View File

Structure of lineage IV Lassa virus glycoprotein complex (strain Josiah)

Perrett, H.R., Ward, A.B.

(2023) Cell Rep 42: 112524-112524

Released	2023-06-07
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Mammarenavirus lassaense
Macromolecule	Glycoprotein G1 (protein) Glycoprotein G2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

1 to 25 of 53 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

4NPY | pdb_00004npy

4RQQ | pdb_00004rqq

5BZD | pdb_00005bzd

5BZW | pdb_00005bzw

5D9Q | pdb_00005d9q

5FEH | pdb_00005feh

5IDL | pdb_00005idl

5IES | pdb_00005ies

5IF0 | pdb_00005if0

5IFA | pdb_00005ifa

5KZC | pdb_00005kzc

5T3S | pdb_00005t3s

6DFG | pdb_00006dfg

6DFH | pdb_00006dfh

6NF5 | pdb_00006nf5

6NFC | pdb_00006nfc

6OC7 | pdb_00006oc7

7RA7 | pdb_00007ra7

7TP3 | pdb_00007tp3

7TP4 | pdb_00007tp4

8DGU | pdb_00008dgu

8DGV | pdb_00008dgv

8DGW | pdb_00008dgw

8DGX | pdb_00008dgx

8EJD | pdb_00008ejd