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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Boto, A."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Escherichia coli (6)
	Lama glama (6)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Tequatrovirus T4 (2)
	Homo sapiens (1)

Taxonomy

	Eukaryota (7)
	Bacteria (6)
	Duplodnaviria (2)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (7)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (5)

Release Date

	2020 - 2024 (3)
	2025 - 2029 (6)

Membrane Protein Annotation

	PDBTM (6)
	mpstruc (6)

Symmetry Type

	Asymmetric (7)
	Cyclic (3)

AllSelected

1 to 9 of 9 Structures

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7QUR \| pdb_00007qur	Download File View File

SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry

Naismith, J.H., Yang, Y., Liu, J.W.

(2022) Science 377: eabm3125-eabm3125

Released	2022-06-01
Method	ELECTRON MICROSCOPY 2.27 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Tequatrovirus T4
Macromolecule	Spike glycoprotein,Fibritin (protein)
Unique Ligands	EIC, GE9, NAG, SIA
Unique branched monosaccharides	FUC, NAG

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7QUS \| pdb_00007qus	Download File View File

SARS-CoV-2 Spike, C3 symmetry

Naismith, J.H., Yang, Y., Liu, J.W.

(2022) Science 377: eabm3125-eabm3125

Released	2022-06-08
Method	ELECTRON MICROSCOPY 2.39 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Tequatrovirus T4
Macromolecule	Spike glycoprotein,Fibritin (protein)
Unique Ligands	EIC, NAG
Unique branched monosaccharides	FUC, NAG

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7T2Q \| pdb_00007t2q	Download File View File

PEGylated Calmodulin-1 (K148U)

Mackay, J.P., Payne, R.J., Patel, K., Dowman, L.J.

(2022) Nat Commun 13: 6885-6885

Released	2022-10-26
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin-1 (protein)
Unique Ligands	CA, MG, ZN

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9G95 \| pdb_00009g95	Download File View File

Lipid III flippase WzxE with NB10 nanobody in outward-facing conformation at 2.7552 A

Le Bas, A., El Omari, K., Lee, M., Naismith, J.H.

(2025) Open Biol 15: 240310-240310

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Lipid III flippase (protein) NB10 Nanobody (protein)
Unique Ligands	CL, MPG, OCT, SO4, ZN

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9G97 \| pdb_00009g97	Download File View File

Lipid III flippase WzxE with NB10 nanobody in outward-facing conformation at 0.9688 A

Le Bas, A., El Omari, K., Lee, M., Naismith, J.H.

(2025) Open Biol 15: 240310-240310

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Lipid III flippase (protein) NB10 Nanobody (protein)
Unique Ligands	CL, LOP, MPG, OCT, SO4, ZN

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9G9M \| pdb_00009g9m	Download File View File

Lipid III flippase WzxE with NB10 and NB7 nanobodies in outward-facing conformation - crystal 1

Le Bas, A., Naismith, J.H.

(2025) Open Biol 15: 240310-240310

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Lipid III flippase (protein) NB10 Nanobody (protein) NB7 Nanobody (protein)
Unique Ligands	PO4

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9G9N \| pdb_00009g9n	Download File View File

Lipid III flippase WzxE with NB10 and NB7 nanobodies in inward-facing conformation - crystal 1

Le Bas, A., Naismith, J.H.

(2025) Open Biol 15: 240310-240310

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Lipid III flippase (protein) NB10 Nanobody (protein) NB7 Nanobody (protein)

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9G9O \| pdb_00009g9o	Download File View File

Lipid III flippase WzxE with NB10 and NB7 nanobodies in outward-facing conformation - crystal 2

Le Bas, A., Naismith, J.H.

(2025) Open Biol 15: 240310-240310

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Lipid III flippase (protein) NB10 Nanobody (protein) NB7 Nanobody (protein)

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9G9P \| pdb_00009g9p	Download File View File

Lipid III flippase WzxE with NB10 and NB7 nanobodies in inward-facing conformation - crystal 2

Le Bas, A., Naismith, J.H.

(2025) Open Biol 15: 240310-240310

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Lipid III flippase (protein) NB10 Nanobody (protein) NB7 Nanobody (protein)

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7QUR | pdb_00007qur

SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry

7QUS | pdb_00007qus

SARS-CoV-2 Spike, C3 symmetry

7T2Q | pdb_00007t2q

PEGylated Calmodulin-1 (K148U)

9G95 | pdb_00009g95

Lipid III flippase WzxE with NB10 nanobody in outward-facing conformation at 2.7552 A

9G97 | pdb_00009g97

Lipid III flippase WzxE with NB10 nanobody in outward-facing conformation at 0.9688 A

9G9M | pdb_00009g9m

Lipid III flippase WzxE with NB10 and NB7 nanobodies in outward-facing conformation - crystal 1

9G9N | pdb_00009g9n

Lipid III flippase WzxE with NB10 and NB7 nanobodies in inward-facing conformation - crystal 1

9G9O | pdb_00009g9o

Lipid III flippase WzxE with NB10 and NB7 nanobodies in outward-facing conformation - crystal 2

9G9P | pdb_00009g9p

Lipid III flippase WzxE with NB10 and NB7 nanobodies in inward-facing conformation - crystal 2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

7QUR | pdb_00007qur

7QUS | pdb_00007qus

7T2Q | pdb_00007t2q

9G95 | pdb_00009g95

9G97 | pdb_00009g97

9G9M | pdb_00009g9m

9G9N | pdb_00009g9n

9G9O | pdb_00009g9o

9G9P | pdb_00009g9p