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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Boons, G.J."

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Search Summary

This query matches 83 Structures.

Refinements

Structure Determination Methodology

experimental (83)

Scientific Name of Source Organism

	Homo sapiens (24)
	Drosophila melanogaster (19)
	Clostridium perfringens ATCC 13124 (7)
	Mammarenavirus lassaense (7)
	Human coronavirus HKU1 (4)
	Pterocarpus angolensis (4)
	Saccharomyces cerevisiae (3)
	Bacillus cereus ATCC 10987 (2)
	Clostridium perfringens (2)
	Gallus gallus (2)

More...

Taxonomy

	Eukaryota (54)
	Riboviria (22)
	Bacteria (13)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (70)
	ELECTRON MICROSCOPY (13)

Polymer Entity Type

Protein (83)

Refinement Resolution (Å)

	1.0 - 1.5 (22)
	1.5 - 2.0 (16)
	2.0 - 2.5 (21)
	2.5 - 3.0 (8)
	3.0 - 3.5 (8)
	3.5 - 4.0 (7)
	> 4.5 (1)

Release Date

	2005 - 2009 (28)
	2015 - 2019 (18)
	2020 - 2024 (37)

Enzyme Classification Name

	Hydrolases (27)
	Transferases (17)
	Isomerases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (42)
	Cyclic (41)
	Dihedral (1)

SCOP Classification

	All beta proteins (25)
	Alpha and beta proteins (a/b) (21)
	All alpha proteins (19)
	Alpha and beta proteins (a+b) (3)
	Coiled coil proteins (1)
	Artifacts (2)

AllSelected

1 to 25 of 83 Structures

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2APH \| pdb_00002aph	Download File View File

Crystal structure of human PGRP-IalphaC in complex with muramyl pentapeptide

Guan, R., Roychowdjury, A., Boons, G., Mariuzza, R.A.

(2006) Protein Sci 15: 1199-1206

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Peptidoglycan recognition protein I-alpha (protein) muramyl pentapeptide (protein)
Unique Ligands	AMU, SO4

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2AR6 \| pdb_00002ar6	Download File View File

Pterocarpus angolensis Lectin (PAL) In Complex With The Pentasaccharide M592

Buts, L., Garcia-Pino, A., Imberty, A., Amiot, N., Boons, G.J., Beeckmans, S., Versees, W., Wyns, L., Loris, R.

(2006) FEBS J 273: 2407-2420

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pterocarpus angolensis
Macromolecule	lectin (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN, NAG

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2ARB \| pdb_00002arb	Download File View File

Pterocarpus angolensis Lectin (PAL) In Complex With The GlcNAc(beta1-2)Man Disaccharide

Buts, L., Garcia-Pino, A., Imberty, A., Amiot, N., Boons, G.-J., Versees, W., Lah, J., Beeckmans, S., Wyns, L., Loris, R.

(2006) FEBS J 273: 2407-2420

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pterocarpus angolensis
Macromolecule	lectin (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN, NAG

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2ARE \| pdb_00002are	Download File View File

Pterocarpus angolensis Lectin (PAL) In Complex With D-Mannose (anomeric mixture)

Buts, L., Garcia-Pino, A., Imberty, A., Amiot, N., Boons, G.-J., Versees, W., Lah, J., Beeckmans, S., Wyns, L., Loris, R.

(2006) FEBS J 273: 2407-2420

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pterocarpus angolensis
Macromolecule	lectin (protein)
Unique Ligands	CA, MAN, MN

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2ARX \| pdb_00002arx	Download File View File

Pterocarpus angolensis seed lectin in complex with the decasaccharide NA2F

Buts, L., Garcia-Pino, A., Imberty, A., Amiot, N., Boons, G.-J., Lah, J., Versees, W., Wyns, L., Loris, R.

(2006) FEBS J 273: 2407-2420

Released	2006-08-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pterocarpus angolensis
Macromolecule	lectin (protein)
Unique Ligands	CA, MN, NAG
Unique branched monosaccharides	BMA, GAL, MAN, NAG, NDG

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2CNB \| pdb_00002cnb	Download File View File

Trypanosoma brucei UDP-galactose-4-epimerase in ternary complex with NAD and the substrate analogue UDP-4-deoxy-4-fluoro-alpha-D-galactose

Alphey, M.S., Ferguson, M.A.J., Hunter, W.N.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 829

Released	2006-06-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Trypanosoma brucei
Macromolecule	UDP-GALACTOSE-4-EPIMERASE (protein)
Unique Ligands	NAD, UFG

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2EAV \| pdb_00002eav	Download File View File

Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein Ibeta

Cho, S., Mariuzza, R.A.

(2007) Proc Natl Acad Sci U S A 104: 8761-8766

Released	2007-09-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Peptidoglycan recognition protein-I-beta (protein)
Unique Ligands	NI

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2EAX \| pdb_00002eax	Download File View File

Crystal structure of human PGRP-IBETAC in complex with glycosamyl muramyl pentapeptide

Cho, S.

(2007) Proc Natl Acad Sci U S A 104: 8761-8766

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	GLYCOSAMYL MURAMYL PENTAPEPTIDE (protein) Peptidoglycan recognition protein-I-beta (protein)
Unique branched monosaccharides	AMV, NAG

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2F7O \| pdb_00002f7o	Download File View File

Golgi alpha-mannosidase II complex with mannostatin A

Kuntz, D.A., Rose, D.R.

(2006) J Am Chem Soc 128: 8310-8319

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Drosophila melanogaster
Macromolecule	alpha-mannosidase II (protein)
Unique Ligands	MPD, MSN, NAG, PO4, ZN

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2F7P \| pdb_00002f7p	Download File View File

Golgi alpha-mannosidase II complex with benzyl-mannostatin A

Kuntz, D.A., Rose, D.R.

(2006) J Am Chem Soc 128: 8310-8319

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Drosophila melanogaster
Macromolecule	alpha-mannosidase II (protein)
Unique Ligands	2SK, MPD, NAG, ZN

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2F7Q \| pdb_00002f7q	Download File View File

Golgi alpha-mannosidase II complex with aminocyclopentitetrol

Kuntz, D.A., Rose, D.R.

To be published

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Drosophila melanogaster
Macromolecule	alpha-mannosidase II (protein)
Unique Ligands	AOL, MPD, NAG, ZN

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2F7R \| pdb_00002f7r	Download File View File

Golgi alpha-mannosidase II complex with benzyl-aminocyclopentitetrol

Kuntz, D.A., Rose, D.R.

To be published

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Drosophila melanogaster
Macromolecule	alpha-mannosidase II (protein)
Unique Ligands	MPD, NAG, SK3, ZN

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3BUB \| pdb_00003bub	Download File View File

Golgi alpha-mannosidase II with an empty active site

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MPD, NAG, ZN

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3BUD \| pdb_00003bud	Download File View File

Golgi mannosidase II D204A catalytic nucleophile mutant with an empty active site

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MPD, NAG, PO4, ZN

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3BUI \| pdb_00003bui	Download File View File

Golgi mannosidase II D204A catalytic nucleophile mutant complex with Tris

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MPD, TRS, ZN

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3BUP \| pdb_00003bup	Download File View File

Golgi alpha-mannosidase II D341N acid-base catalyst mutant with bound mannose

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MAN, MPD, NAG, ZN

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3BUQ \| pdb_00003buq	Download File View File

Golgi alpha-mannosidase II D204A catalytic nucleophile mutant with bound mannose.

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MAN, MPD, NAG, ZN

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3BVT \| pdb_00003bvt	Download File View File

GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl (alpha-D-mannopyranosyl)-(1->3)-S-alpha-D-mannopyranoside

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MPD, MRD, NAG, PO4, ZN
Unique branched monosaccharides	MAN, Z4R

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3BVU \| pdb_00003bvu	Download File View File

GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl(alpha-D-mannopyranosyl)-(1->3)-S-[(alpha-D-mannopyranosyl)-(1->6)]-alpha-D-mannopyranoside

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MRD, NAG, PO4, ZN
Unique branched monosaccharides	MAN, Z4R

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3BVV \| pdb_00003bvv	Download File View File

Golgi mannosidase II D204A catalytic nucleophile mutant complex with METHYL ALPHA-D-MANNOPYRANOSYL-(1->3)-[6-THIO-ALPHA-D-MANNOPYRANOSYL-(1->6)]-BETA-D-MANNOPYRANOSIDE

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MPD, MRD, PO4, ZN
Unique branched monosaccharides	MAN, YZ0, Z4Y

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3BVW \| pdb_00003bvw	Download File View File

GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl (2-deoxy-2-acetamido-beta-D-glucopyranosyl)-(1->2)-ALPHA-D-mannopyranosyl- (1->3)-[ALPHA-D-mannopyranosyl-(1->6)-6-thio-alpha-D-mannopyranosyl- (1->6)]-BETA-D-mannopyranoside

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MPD, ZN
Unique branched monosaccharides	MAN, NAG, YZ0, Z4Y

Explore in 3D

3BVX \| pdb_00003bvx	Download File View File

GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl (2-deoxy-2-acetamido-beta-D-glucopyranosyl)-(1->2)-(alpha-D-mannopyranosyl)- (1->3)-[(alpha-D-mannopyranosyl)-(1->6)-(alpha-D-mannopyranosyl)-(1->6)]-beta-D-mannopyranoside

Kuntz, D.A., Rose, D.R.

(2008) J Am Chem Soc 130: 8975-8983

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MPD, ZN
Unique branched monosaccharides	MAN, NAG, YZ0

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3D4K \| pdb_00003d4k	Download File View File

Concanavalin A Complexed to a Synthetic Analog of the Trimannoside

Kadirvelraj, R., Foley, B.L., Dyekjaer, J.D., Woods, R.J.

(2008) J Am Chem Soc 130: 16933-16942

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Canavalia ensiformis
Macromolecule	Concanavalin-A (protein)
Unique Ligands	CA, GOL, MN
Unique branched monosaccharides	H1M, MAN

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3DX0 \| pdb_00003dx0	Download File View File

Golgi alpha-Mannosidase II in complex with Mannostatin A at pH 5.75

Kuntz, D.A., Rose, D.R.

(2009) Chembiochem 10: 268-277

Released	2009-07-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MPD, MSN, NAG, SO4, ZN

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3DX1 \| pdb_00003dx1	Download File View File

Golgi alpha-Mannosidase II in complex with Mannostatin analog (1S,2S,3R,4R)-4-aminocyclopentane-1,2,3-triol

Kuntz, D.A., Rose, D.R.

(2009) Chembiochem 10: 268-277

Released	2009-07-07
Method	X-RAY DIFFRACTION 1.21 Å
Organisms	Drosophila melanogaster
Macromolecule	Alpha-mannosidase 2 (protein)
Unique Ligands	MRD, NAG, PO4, YHO, ZN

1 to 25 of 83 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2APH | pdb_00002aph

2AR6 | pdb_00002ar6

2ARB | pdb_00002arb

2ARE | pdb_00002are

2ARX | pdb_00002arx

2CNB | pdb_00002cnb

2EAV | pdb_00002eav

2EAX | pdb_00002eax

2F7O | pdb_00002f7o

2F7P | pdb_00002f7p

2F7Q | pdb_00002f7q

2F7R | pdb_00002f7r

3BUB | pdb_00003bub

3BUD | pdb_00003bud

3BUI | pdb_00003bui

3BUP | pdb_00003bup

3BUQ | pdb_00003buq

3BVT | pdb_00003bvt

3BVU | pdb_00003bvu

3BVV | pdb_00003bvv

3BVW | pdb_00003bvw

3BVX | pdb_00003bvx

3D4K | pdb_00003d4k

3DX0 | pdb_00003dx0

3DX1 | pdb_00003dx1