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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bochenkova, E."

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Search Summary

This query matches 53 Structures.

Refinements

Structure Determination Methodology

experimental (53)

Scientific Name of Source Organism

	Homo sapiens (25)
	Clostridioides difficile (18)
	Clostridioides difficile 630 (5)
	Waddlia chondrophila (2)
	synthetic construct (2)
	Danio rerio (1)
	Gallus gallus (1)
	Geobacillus stearothermophilus (1)
	Saccharomyces cerevisiae S288C (1)
	Schizosaccharomyces pombe 972h- (1)

More...

Taxonomy

	Eukaryota (29)
	Bacteria (26)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (52)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (53)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (21)
	2.0 - 2.5 (14)
	2.5 - 3.0 (6)

Release Date

	2015 - 2019 (37)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (28)
	Transferases (21)

Symmetry Type

	Asymmetric (43)
	Cyclic (10)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Artifacts (1)

AllSelected

1 to 25 of 53 Structures

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5A0P \| pdb_00005a0p	Download File View File

Apo-structure of metalloprotease Zmp1 from Clostridium difficile

Schacherl, M., Pichlo, C., Neundorf, I., Baumann, U.

(2015) Structure 23: 1632

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.398 Å
Organisms	Clostridioides difficile 630
Macromolecule	ZINC METALLOPROTEASE ZMP1 (protein)
Unique Ligands	ZN

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5A0R \| pdb_00005a0r	Download File View File

Product peptide-bound structure of metalloprotease Zmp1 variant E143A from Clostridium difficile

Schacherl, M., Pichlo, C., Neundorf, I., Baumann, U.

(2015) Structure 23: 1632

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.251 Å
Organisms	Clostridioides difficile 630 synthetic construct
Macromolecule	PRODUCT PEPTIDE (protein) ZINC METALLOPROTEASE ZMP1 (protein)
Unique Ligands	GOL, ZN

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5A0S \| pdb_00005a0s	Download File View File

Apo-structure of metalloprotease Zmp1 variant E143A from Clostridium difficile

Schacherl, M., Pichlo, C., Neundorf, I., Baumann, U.

(2015) Structure 23: 1632

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Clostridioides difficile 630
Macromolecule	ZINC METALLOPROTEASE ZMP1 (protein)
Unique Ligands	ZN

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5A0X \| pdb_00005a0x	Download File View File

Substrate peptide-bound structure of metalloprotease Zmp1 variant E143AY178F from Clostridium difficile

Schacherl, M., Pichlo, C., Neundorf, I., Baumann, U.

(2015) Structure 23: 1632

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Clostridioides difficile 630 synthetic construct
Macromolecule	SUBSTRATE PEPTIDE (protein) ZINC METALLOPROTEASE ZMP1 (protein)
Unique Ligands	ZN

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5LNB \| pdb_00005lnb	Download File View File

Crystal structure of the de-sumoylating protease

Eckhoff, J., Dohmen, J., Pichlo, C., Baumann, U.

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like-specific protease 2 (protein)
Unique Ligands	ACT

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5ML5 \| pdb_00005ml5	Download File View File

Human p38alpha MAPK in complex with imidazolyl pyridine inhibitor 11b

Buehrmann, M., Rauh, D.

(2017) Molecules 22:

Released	2017-04-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	1VI, BOG

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5MQV \| pdb_00005mqv	Download File View File

Crystal structure of human Casein Kinase I delta in complex with 4-(2,5-Dimethoxyphenyl)-N-(4-(5-(4-fluorphenyl)-2-(methylthio)-1H-imidazol-4-yl)-pyridin-2-yl)-1-methyl-1H-pyrrole-2-carboxamide

Pichlo, C., Brunstein, E., Baumann, U.

(2017) Molecules 22:

Released	2017-04-05
Method	X-RAY DIFFRACTION 2.154 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase I isoform delta (protein)
Unique Ligands	D5Q, PO4

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5N12 \| pdb_00005n12	Download File View File

Crystal structure of TCE treated rPPEP-1

Pichlo, C., Schacherl, M., Baumann, U.

(2018) Acta Crystallogr F Struct Biol Commun 74: 307-314

Released	2018-05-30
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Clostridioides difficile 630
Macromolecule	Pro-Pro endopeptidase (protein)
Unique Ligands	8FH, TRS, ZN

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5OKT \| pdb_00005okt	Download File View File

Crystal structure of human Casein Kinase I delta in complex with IWP-2

Pichlo, C., Brunstein, E., Baumann, U.

(2018) J Med Chem 61: 4087-4102

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase I isoform delta (protein)
Unique Ligands	9XK, ACT, GOL, SO4

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6EI1 \| pdb_00006ei1	Download File View File

Crystal structure of the covalent complex between deubiquitinase ZUFSP (ZUP1) and Ubiquitin-PA

Pichlo, C., Baumann, U., Hofmann, K., Hermanns, T.

(2018) Nat Commun 9: 799-799

Released	2018-03-07
Method	X-RAY DIFFRACTION 1.732 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein) Zinc finger with UFM1-specific peptidase domain protein (protein)
Unique Ligands	AYE, GOL, MLI

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6F1W \| pdb_00006f1w	Download File View File

Crystal structure of human Casein Kinase I delta in complex with compound 31a

Pichlo, C., Brunstein, E., Baumann, U.

(2019) Molecules 24:

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.864 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase I isoform delta (protein)
Unique Ligands	CG5, SO4

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6F26 \| pdb_00006f26	Download File View File

Crystal structure of human Casein Kinase I delta in complex with compound 31b

Pichlo, C., Brunstein, E., Baumann, U.

(2019) Molecules 24:

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase I isoform delta (protein)
Unique Ligands	C9Z, SO4

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6FSJ \| pdb_00006fsj	Download File View File

Crystal structure of TCE-treated Lysozyme

Pichlo, C., Baumann, U.

(2018) Acta Crystallogr F Struct Biol Commun 74: 307-314

Released	2018-05-02
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CIT, EDO

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6FSM \| pdb_00006fsm	Download File View File

Crystal structure of TCE-treated Thermolysin

Pichlo, C., Baumann, U.

(2018) Acta Crystallogr F Struct Biol Commun 74: 307-314

Released	2018-05-02
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Thermolysin (protein)
Unique Ligands	CA, GOL, LYS, PO4, VAL, ZN

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6HMP \| pdb_00006hmp	Download File View File

Crystal structure of human Casein Kinase I delta in complex with a photoswitchable 2-Azoimidazole-based Inhibitor (compound 3)

Pichlo, C., Schehr, M., Charl, J., Brunstein, E., Peifer, C., Baumann, U.

(2019) Photochem Photobiol Sci 18: 1398-1407

Released	2019-09-11
Method	X-RAY DIFFRACTION 2.039 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase I isoform delta (protein)
Unique Ligands	GEW, PO4

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6HMR \| pdb_00006hmr	Download File View File

Crystal structure of human Casein Kinase I delta in complex with a photoswitchable 2-Azothiazole-based inhibitor (compound 2)

Pichlo, C., Schehr, M., Charl, J., Brunstein, E., Peifer, C., Baumann, U.

(2019) Photochem Photobiol Sci 18: 1398-1407

Released	2019-09-11
Method	X-RAY DIFFRACTION 1.782 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase I isoform delta (protein)
Unique Ligands	GE5, MLA

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6HWT \| pdb_00006hwt	Download File View File

Crystal structure of p38alpha in complex with a reduced photoswitchable 2-Azothiazol-based Inhibitor (compound 31)

Mueller, M.P., Rauh, D.

(2019) Photochem Photobiol Sci 18: 1398-1407

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	BOG, GXH

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6HWU \| pdb_00006hwu	Download File View File

Crystal structure of p38alpha in complex with a photoswitchable 2-Azothiazol-based Inhibitor (compound 2)

Mueller, M.P., Rauh, D.

(2019) Photochem Photobiol Sci 18: 1398-1407

Released	2019-04-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	BOG, GE5

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6HWV \| pdb_00006hwv	Download File View File

Crystal structure of p38alpha in complex with a photoswitchable 2-Azoimidazol-based Inhibitor (compound 3)

Mueller, M.P., Rauh, D.

(2019) Photochem Photobiol Sci 18: 1398-1407

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	BOG, GEW

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6R4E \| pdb_00006r4e	Download File View File

Crystal structure of human GFAT-1 in complex with Glucose-6-Phosphate and L-Glu

Ruegenberg, S., Horn, M., Pichlo, C., Allmeroth, K., Baumann, U., Denzel, M.S.

(2020) Nat Commun 11: 687-687

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.353 Å
Organisms	Homo sapiens
Macromolecule	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (protein)
Unique Ligands	G6Q, GLU

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6R4F \| pdb_00006r4f	Download File View File

Crystal structure of human GFAT-1 in complex with Glucose-6-Phosphate

Ruegenberg, S., Horn, M., Pichlo, C., Allmeroth, K., Baumann, U., Denzel, M.S.

(2020) Nat Commun 11: 687-687

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Homo sapiens
Macromolecule	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (protein)
Unique Ligands	G6Q

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6R4G \| pdb_00006r4g	Download File View File

Crystal structure of human GFAT-1 in complex with UDP-GlcNAc

Ruegenberg, S., Horn, M., Pichlo, C., Allmeroth, K., Baumann, U., Denzel, M.S.

(2020) Nat Commun 11: 687-687

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Homo sapiens
Macromolecule	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (protein)
Unique Ligands	G6Q, MG, UD1

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6R4H \| pdb_00006r4h	Download File View File

Crystal structure of human GFAT-1 G451E

Ruegenberg, S., Horn, M., Pichlo, C., Allmeroth, K., Baumann, U., Denzel, M.S.

(2020) Nat Commun 11: 687-687

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.244 Å
Organisms	Homo sapiens
Macromolecule	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (protein)
Unique Ligands	G6Q, GLU

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6R4I \| pdb_00006r4i	Download File View File

Crystal structure of human GFAT-1 G461E

Ruegenberg, S., Horn, M., Pichlo, C., Allmeroth, K., Baumann, U., Denzel, M.S.

(2020) Nat Commun 11: 687-687

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.586 Å
Organisms	Homo sapiens
Macromolecule	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (protein)
Unique Ligands	G6Q, GLU

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6R4J \| pdb_00006r4j	Download File View File

Crystal structure of human GFAT-1 G451E in complex with UDP-GlcNAc

Ruegenberg, S., Horn, M., Pichlo, C., Allmeroth, K., Baumann, U., Denzel, M.S.

(2020) Nat Commun 11: 687-687

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (protein)
Unique Ligands	G6Q, GLU, MG, UD1

1 to 25 of 53 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5A0P | pdb_00005a0p

5A0R | pdb_00005a0r

5A0S | pdb_00005a0s

5A0X | pdb_00005a0x

5LNB | pdb_00005lnb

5ML5 | pdb_00005ml5

5MQV | pdb_00005mqv

5N12 | pdb_00005n12

5OKT | pdb_00005okt

6EI1 | pdb_00006ei1

6F1W | pdb_00006f1w

6F26 | pdb_00006f26

6FSJ | pdb_00006fsj

6FSM | pdb_00006fsm

6HMP | pdb_00006hmp

6HMR | pdb_00006hmr

6HWT | pdb_00006hwt

6HWU | pdb_00006hwu

6HWV | pdb_00006hwv

6R4E | pdb_00006r4e

6R4F | pdb_00006r4f

6R4G | pdb_00006r4g

6R4H | pdb_00006r4h

6R4I | pdb_00006r4i

6R4J | pdb_00006r4j