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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bick, M.J."

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Search Summary

This query matches 104 Structures.

Refinements

Structure Determination Methodology

experimental (104)

Scientific Name of Source Organism

	synthetic construct (91)
	uncultured soil bacterium (4)
	Bacillus subtilis subsp. subtilis str. 168 (3)
	Homo sapiens (2)
	Nonomuraea gerenzanensis (2)
	Escherichia coli (1)
	Geobacillus stearothermophilus 10 (1)
	Mus musculus (1)
	Mycobacterium xenopi (1)
	Thermotoga maritima (1)

Taxonomy

	other sequences (91)
	Bacteria (11)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (77)
	SOLUTION NMR (15)
	ELECTRON MICROSCOPY (12)

Polymer Entity Type

Protein (104)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (6)
	1.5 - 2.0 (20)
	2.0 - 2.5 (25)
	2.5 - 3.0 (13)
	3.0 - 3.5 (8)
	3.5 - 4.0 (8)
	4.0 - 4.5 (3)
	> 4.5 (5)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (8)
	2015 - 2019 (21)
	2020 - 2024 (74)

Enzyme Classification Name

	Transferases (6)
	Isomerases (1)
	Hydrolases (3)

Symmetry Type

	Asymmetric (50)
	Cyclic (40)
	Octahedral (2)
	Tetrahedral (2)
	Dihedral (1)
	Helical (1)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	Artifacts (2)
	All alpha proteins (1)
	All beta proteins (1)

AllSelected

1 to 25 of 104 Structures

Page 1 of 5

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3D36 \| pdb_00003d36	Download File View File

How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the Inhibitor Sda

Bick, M.J., Lamour, V., Rajashankar, K.R., Gordiyenko, Y., Robinson, C.V., Darst, S.A.

(2009) J Mol Biology 386: 163-177

Released	2009-01-13
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Geobacillus stearothermophilus 10
Macromolecule	Sporulation kinase B (protein) Sporulation kinase inhibitor Sda (protein)
Unique Ligands	ADP, MG, MPD

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3MG9 \| pdb_00003mg9	Download File View File

Teg 12 Binary Structure Complexed with the Teicoplanin Aglycone

Bick, M.J., Banik, J.J., Darst, S.A., Brady, S.F.

(2010) Biochemistry 49: 4159

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Nonomuraea gerenzanensis uncultured soil bacterium
Macromolecule	TEG12 (protein) TEICOPLANIN AGLYCONE (protein)
Unique Ligands	FMT, GOL

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3MGB \| pdb_00003mgb	Download File View File

Teg 12 Ternary Structure Complexed with PAP and the Teicoplanin Aglycone

Bick, M.J., Banik, J.J., Darst, S.A., Brady, S.F.

(2010) Biochemistry 49: 4159

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Nonomuraea gerenzanensis uncultured soil bacterium
Macromolecule	TEG12 (protein) TEICOPLANIN AGLYCONE (protein)
Unique Ligands	ACT, CL, PAP

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3MGC \| pdb_00003mgc	Download File View File

Teg12 Apo

Bick, M.J., Banik, J.J., Darst, S.A., Brady, S.F.

(2010) Biochemistry 49: 4159-4168

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	uncultured soil bacterium
Macromolecule	Teg12 (protein)
Unique Ligands	GOL, IMD, PME

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3NIB \| pdb_00003nib	Download File View File

Teg14 Apo

Bick, M.J., Banik, J.J., Darst, S.A., Brady, S.F.

(2010) Acta Crystallogr D Biol Crystallogr 66: 1278-1286

Released	2010-12-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	uncultured soil bacterium
Macromolecule	Teg14 (protein)
Unique Ligands	GOL, NHE

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3NRX \| pdb_00003nrx	Download File View File

Insights into anti-parallel microtubule crosslinking by PRC1, a conserved non-motor microtubule binding protein

Kapoor, T.M., Subramanian, R., Wilson-Kubalek, E.M., Arthur, C.P., Bick, M.J., Campbell, E.A., Darst, S.A., Milligan, R.A.

(2010) Cell 142: 433-443

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Protein regulator of cytokinesis 1 (protein)

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3NRY \| pdb_00003nry	Download File View File

Insights into anti-parallel microtubule crosslinking by PRC1, a conserved microtubule binding protein

Kapoor, T.M., Subramanian, R., Wilson-Kubalek, E.M., Arthur, C.P., Bick, M.J., Campbell, E.A., Darst, S.A., Milligan, R.A.

(2010) Cell 142: 433-443

Released	2010-08-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Protein regulator of cytokinesis 1 (protein)

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4IJB \| pdb_00004ijb	Download File View File

Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR288

Vorobiev, S., Su, M., Bick, M.J., Seetharaman, J., Khare, S., Maglaqui, M., Xiao, R., Lee, D., Day, A., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Hunt, J., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.739 Å
Organisms	synthetic construct
Macromolecule	Engineered Protein OR288 (protein)

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4OZ6 \| pdb_00004oz6	Download File View File

Structure of the Branched Intermediate in Protein Splicing

Bick, M.J., Liu, Z., Frutos, S., Vila-Perello, M., Debelouchina, G.T., Darst, S.A., Muir, T.W.

(2014) Proc Natl Acad Sci U S A 111: 8422-8427

Released	2014-05-14
Method	X-RAY DIFFRACTION 2.786 Å
Organisms	Mycobacterium xenopi
Macromolecule	ALA-MET-ARG-TYR (protein) Mxe gyrA intein (protein)
Unique Ligands	MG

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5TVV \| pdb_00005tvv	Download File View File

Computationally Designed Fentanyl Binder - Fen49* Apo

Bick, M.J., Greisen, P.J., Morey, K.J., Antunes, A.S., La, D., Sankaran, B., Reymond, L., Johnsson, K., Medford, J.I., Baker, D.

(2017) Elife 6:

Released	2017-10-04
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Endo-1,4-beta-xylanase A (protein)
Unique Ligands	K

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5TVY \| pdb_00005tvy	Download File View File

Computationally Designed Fentanyl Binder - Fen49

Bick, M.J., Greisen, P.J., Morey, K.J., Antunes, M.S., La, D., Sankaran, B., Reymond, L., Johnsson, K., Medford, J.I., Baker, D.

(2017) Elife 6:

Released	2017-10-04
Method	X-RAY DIFFRACTION 1 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Endo-1,4-beta-xylanase A (protein)
Unique Ligands	XPE

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5TZO \| pdb_00005tzo	Download File View File

Computationally Designed Fentanyl Binder - Fen49*-Complex

Bick, M.J., Greisen, P.J., Morey, K.J., Antunes, M.S., La, D., Sankaran, B., Reymond, L., Johnsson, K., Medford, J.I., Baker, D.

(2017) Elife 6:

Released	2017-10-04
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Endo-1,4-beta-xylanase A (protein)
Unique Ligands	7V7, CL, K

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6CZG \| pdb_00006czg	Download File View File

Structure of a redesigned beta barrel, b11L5F_LGL

Doyle, L.A., Stoddard, B.L.

(2018) Nature 561: 485-491

Released	2018-09-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	synthetic construct
Macromolecule	b11L5F_LGL (protein)

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6CZH \| pdb_00006czh	Download File View File

Structure of a redesigned beta barrel, mFAP0, bound to DFHBI

Doyle, L.A., Stoddard, B.L.

(2018) Nature 561: 485-491

Released	2018-09-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	synthetic construct
Macromolecule	mFAP0 (protein)
Unique Ligands	38E

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6CZI \| pdb_00006czi	Download File View File

Structure of a redesigned beta barrel, mFAP1, bound to DFHBI

Doyle, L.A., Stoddard, B.L.

(2018) Nature 561: 485-491

Released	2018-09-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	synthetic construct
Macromolecule	mFAP1 (protein)
Unique Ligands	38E

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6CZJ \| pdb_00006czj	Download File View File

Structure of a redesigned beta barrel, b10

Doyle, L.A., Stoddard, B.L.

(2018) Nature 561: 485-491

Released	2018-09-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	b10 (protein)
Unique Ligands	SO4

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6D0T \| pdb_00006d0t	Download File View File

De novo design of a fluorescence-activating beta barrel - BB1

Dou, J., Vorobieva, A.A., Sheffler, W., Doyle, L.A., Park, H., Bick, M.J., Mao, B., Foight, G.W., Lee, M., Carter, L., Sankaran, B., Ovchinnikov, S., Marcos, E., Huang, P., Vaughan, J.C., Stoddard, B.L., Baker, D.

(2018) Nature 561: 485-491

Released	2018-09-19
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	synthetic construct
Macromolecule	BB1 (protein)

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6DKM \| pdb_00006dkm	Download File View File

DHD131

Bick, M.J., Chen, Z., Baker, D.

(2019) Nature 565: 106-111

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	synthetic construct
Macromolecule	DHD131_A (protein) DHD131_B (protein)

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6DLC \| pdb_00006dlc	Download File View File

Designed protein DHD1:234_A, Designed protein DHD1:234_B

Bick, M.J., Chen, Z., Baker, D.

(2019) Nature 565: 106-111

Released	2018-12-26
Method	X-RAY DIFFRACTION 3.261 Å
Organisms	synthetic construct
Macromolecule	Designed protein DHD1:234_A (protein) Designed protein DHD1:234_B (protein)

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6DLM \| pdb_00006dlm	Download File View File

DHD127

Bick, M.J., Chen, Z., Baker, D.

(2019) Nature 565: 106-111

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.753 Å
Organisms	synthetic construct
Macromolecule	DHD127_A (protein) DHD127_B (protein)

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6DM9 \| pdb_00006dm9	Download File View File

DHD15_extended

Bick, M.J., Chen, Z., Baker, D.

(2019) Nature 565: 106-111

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	synthetic construct
Macromolecule	DHD15_extended_A (protein) DHD15_extended_B (protein)
Unique Ligands	SO4

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6DMA \| pdb_00006dma	Download File View File

DHD15_closed

Bick, M.J., Chen, Z., Baker, D.

(2019) Nature 565: 106-111

Released	2018-12-19
Method	X-RAY DIFFRACTION 3.363 Å
Organisms	synthetic construct
Macromolecule	DHD15_closed_A (protein) DHD15_closed_B (protein)

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6DMP \| pdb_00006dmp	Download File View File

De Novo Design of a Protein Heterodimer with Specificity Mediated by Hydrogen Bond Networks

Chen, Z., Flores-Solis, D., Sgourakis, N.G., Baker, D.

(2019) Nature 565: 106-111

Released	2018-12-19
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Designed orthogonal protein DHD13_XAAA_A (protein) Designed orthogonal protein DHD13_XAAA_B (protein)