RCSB PDB: Search

4JC8	Download File View File

Crystal Structure of HOPS component Vps33 from Chaetomium thermophilum

(2013) PLoS One 8: e67409-e67409

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	HOPS component Vps33 (protein)

4KMO	Download File View File

Crystal Structure of the Vps33-Vps16 HOPS subcomplex from Chaetomium thermophilum

(2013) PLoS One 8: e67409-e67409

Released	2013-06-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative vacuolar protein sorting-associated protein (protein) Small conjugating protein ligase-like protein (protein)
Unique Ligands	SO4

5BUZ	Download File View File

Crystal Structure of a Complex Between the SNARE Vam3 and the HOPS Vps33-Vps16 subcomplex from Chaetomium thermophilum

(2015) Science 349: 1111-1114

Released	2015-08-05
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative vacuolar protein sorting-associated protein (protein) SM (Sec1/Munc18-like) protein (protein) SNAP receptor-like protein (protein)

5BV0	Download File View File

Crystal Structure of a Complex Between the SNARE Nyv1 and the HOPS Vps33-Vps16 subcomplex from Chaetomium thermophilum

(2015) Science 349: 1111-1114

Released	2015-08-05
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermochaetoides thermophila Thermochaetoides thermophila DSM 1495
Macromolecule	SM (Sec1/Munc18-like) protein (protein) SNARE domain (protein) Vps16 (protein)

5BV1	Download File View File

Crystal Structure of a Vps33-Vps16 Complex from Chaetomium thermophilum

(2015) Science 349: 1111-1114

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.902 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative vacuolar protein sorting-associated protein (protein) VPS33 (protein)
Unique Ligands	MLT

Turegun, B., Dominguez, R.

5TGC	Download File View File

Structure of the hetero-trimer of Rtt102-Arp7/9 bound to ATP

(2018) Commun Biol 1:

Released	2017-09-06
Method	X-RAY DIFFRACTION 3.245 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Actin-like protein ARP9 (protein) Actin-related protein 7 (protein) Regulator of Ty1 transposition protein 102 (protein)
Unique Ligands	ATP, SO4

6OWO	Download File View File

CRYO-EM STRUCTURE OF PHOSPHORYLATED AP-2 CORE BOUND TO NECAP

Partlow, E.A., Baker, R.W., Beacham, G.M., Chappie, J.S., Leschziner, A.E., Hollopeter, G.

(2019) Elife 8:

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	AP-2 complex subunit alpha-2 (protein) AP-2 complex subunit beta (protein) AP-2 complex subunit mu (protein) AP-2 complex subunit sigma (protein) Adaptin ear-binding coat-associated protein 2 (protein)

6OXL	Download File View File

CRYO-EM STRUCTURE OF PHOSPHORYLATED AP-2 (mu E302K) BOUND TO NECAP IN THE PRESENCE OF SS DNA

Partlow, E.A., Baker, R.W., Beacham, G.M., Chappie, J., Leschziner, A.E., Hollopeter, G.

(2019) Elife 8:

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Unique protein chains: 6

6V9H	Download File View File

Ankyrin repeat and SOCS-box protein 9 (ASB9), ElonginB (ELOB), and ElonginC (ELOC) bound to its substrate Brain-type Creatine Kinase (CKB)

Komives, E.A., Lumpkin, R.J., Baker, R.W., Leschziner, A.E.

(2020) Nat Commun 11: 2866-2866

Released	2020-04-29
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Ankyrin repeat and SOCS box protein 9 (protein) Creatine kinase B-type (protein) Elongin-B (protein) Elongin-C (protein)

6V9I	Download File View File

cryo-EM structure of Cullin5 bound to RING-box protein 2 (Cul5-Rbx2)

Komives, E.A., Lumpkin, R.J., Baker, R.W., Leschziner, A.E.

(2020) Nat Commun 11: 2866-2866

Released	2020-04-29
Method	ELECTRON MICROSCOPY 5.2 Å
Organisms	Homo sapiens Mus musculus Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G,Cullin-5 (protein) RING-box protein 2 (protein)
Unique Ligands	ZN

Leschziner, A.E., Baker, R.W.

6VZ4	Download File View File

Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 bound to the nucleosome in ADP Beryllium Fluoride state

(2021) Nat Struct Mol Biol 28: 71-80

Released	2020-12-02
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, BEF, MG

Leschziner, A.E., Baker, R.W.

6VZG	Download File View File

Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102

(2021) Nat Struct Mol Biol 28: 71-80

Released	2020-12-02
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Actin-like protein ARP9 (protein) Actin-related protein 7 (protein) Nuclear protein STH1/NPS1 (protein) Regulator of Ty1 transposition protein 102 (protein)
Unique Ligands	ATP

7RW8	Download File View File

AP2 bound to heparin in the closed conformation

(2022) Nat Struct Mol Biol 29: 339-347

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Mus musculus
Macromolecule	AP-2 complex subunit alpha-2 (protein) AP-2 complex subunit beta (protein) AP-2 complex subunit mu (protein) AP-2 complex subunit sigma (protein)

7RW9	Download File View File

AP2 bound to heparin in the bowl conformation

(2022) Nat Struct Mol Biol 29: 339-347

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Mus musculus
Macromolecule	AP-2 complex subunit alpha-2 (protein) AP-2 complex subunit beta (protein) AP-2 complex subunit mu (protein) AP-2 complex subunit sigma (protein)

7RWA	Download File View File

AP2 bound to heparin and Tgn38 tyrosine cargo peptide

(2022) Nat Struct Mol Biol 29: 339-347

Released	2022-03-30
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Mus musculus
Macromolecule	AP-2 complex subunit alpha-2 (protein) AP-2 complex subunit beta (protein) AP-2 complex subunit mu (protein) AP-2 complex subunit sigma (protein) Trans-Golgi network integral membrane protein TGN38 peptide (protein)

7RWB	Download File View File

AP2 bound to the APA domain of SGIP in the presence of heparin

(2022) Nat Struct Mol Biol 29: 339-347

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Mus musculus
Macromolecule	AP-2 complex subunit alpha-2 (protein) AP-2 complex subunit beta (protein) AP-2 complex subunit mu (protein) AP-2 complex subunit sigma (protein)

7RWC	Download File View File

AP2 bound to the APA domain of SGIP and heparin; partial signal subtraction and symmetry expansion

(2022) Nat Struct Mol Biol 29: 339-347

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Mus musculus
Macromolecule	AP-2 complex subunit alpha-2 (protein) AP-2 complex subunit beta (protein) AP-2 complex subunit mu (protein) AP-2 complex subunit sigma (protein) SH3-containing GRB2-like protein 3-interacting protein 1 (protein)

8CUK	Download File View File

X-ray Structure of the WD40 domain of HOPS subunit Vps11 from Yeast

Port, S.A., Baker, R.W., Jeffrey, P.D., Hughson, F.M.

To be published

Released	2022-05-25
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	E3 ubiquitin-protein ligase PEP5 (protein)

8T1O	Download File View File

AP2 bound to MSP2N2 nanodisc with Tgn38 cargo peptide; composite map

Baker, R.W., Cannon, K.S., Reta, S.

(2023) J Struct Biol 215: 107989-107989

Released	2023-07-12
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	AP-2 complex subunit alpha-2 (protein) AP-2 complex subunit beta (protein) AP-2 complex subunit mu (protein) AP-2 complex subunit sigma (protein) Trans-Golgi network integral membrane protein TGN38 (protein)
Unique Ligands	PIO

9C58	Download File View File

AP-3 bound to myristoylated Arf1 (Q71L)

(2024) Proc Natl Acad Sci U S A 121: e2411974121-e2411974121

Released	2024-12-18
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor 1 (protein) AP-3 complex subunit beta-1 (protein) AP-3 complex subunit delta-1 (protein) AP-3 complex subunit mu-1 (protein) AP-3 complex subunit sigma-1 (protein)
Unique Ligands	GTP, MG

9C59	Download File View File

Human AP-3 dimer bound to myristoylated Arf1 (Q71L) and LAMP1 cargo on a lipid nanodisc

(2024) Proc Natl Acad Sci U S A 121: e2411974121-e2411974121

Released	2024-12-18
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

9C5A	Download File View File

AP-3 Arf1 dimeric interface, focused refinement

(2024) Proc Natl Acad Sci U S A 121: e2411974121-e2411974121

Released	2024-12-18
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor 1 (protein) AP-3 complex subunit beta-1 (protein) AP-3 complex subunit mu-1 (protein) Lysosome-associated membrane glycoprotein 1 (protein)
Unique Ligands	GTP, MG

9C5B	Download File View File

AP-3 bound to myristoylated Arf1 (Q71L) and LAMPI on a lipid nanodisc; combined map

(2024) Proc Natl Acad Sci U S A 121: e2411974121-e2411974121

Released	2024-12-18
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	GTP, MG

9C5C	Download File View File

Structure of Human Adaptor Protein Complex AP-3 in the Apo State