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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Arakawa, H."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Fusarium oxysporum (8)
	Homo sapiens (4)

Taxonomy

Eukaryota (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (5)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (1)
	2010 - 2014 (3)

Enzyme Classification Name

	Oxidoreductases (8)
	Hydrolases (2)
	Transferases (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (2)

SCOP Classification

	All alpha proteins (8)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 12 of 12 Structures

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1CL6 \| pdb_00001cl6	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1CMJ \| pdb_00001cmj	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1CMN \| pdb_00001cmn	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 (protein)
Unique Ligands	HEM, NO

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1F24 \| pdb_00001f24	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ALA MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1F25 \| pdb_00001f25	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ASN MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1F26 \| pdb_00001f26	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243VAL MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE (protein)
Unique Ligands	GOL, HEM, NO

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1JFB \| pdb_00001jfb	Download File View File

X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferric resting state at atomic resolution

Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Acta Crystallogr D Biol Crystallogr 58: 81-89

Released	2001-12-20
Method	X-RAY DIFFRACTION 1 Å
Organisms	Fusarium oxysporum
Macromolecule	nitric-oxide reductase cytochrome P450 55A1 (protein)
Unique Ligands	GOL, HEM

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1JFC \| pdb_00001jfc	Download File View File

X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferrous CO state at atomic resolution

Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Acta Crystallogr D Biol Crystallogr 58: 81-89

Released	2001-12-20
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Fusarium oxysporum
Macromolecule	nitric-oxide reductase Cytochrome P450 55A1 (protein)
Unique Ligands	CMO, GOL, HEM

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1TVO \| pdb_00001tvo	Download File View File

The structure of ERK2 in complex with a small molecule inhibitor

Kinoshita, T.

(2005) Biochem Biophys Res Commun 336: 357-363

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	FRZ

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3AGX \| pdb_00003agx	Download File View File

Crystal structure of human Hsp40 Hdj1 peptide-binding domain

Suzuki, H., Noguchi, S., Satow, Y.

(2010) Biochemistry 49: 8577-8584

Released	2011-02-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	DnaJ homolog subfamily B member 1 (protein)

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3AGY \| pdb_00003agy	Download File View File

Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70

Suzuki, H., Noguchi, S., Satow, Y.

(2010) Biochemistry 49: 8577-8584

Released	2011-02-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	DnaJ homolog subfamily B member 1 (protein) peptide of Heat shock cognate 71 kDa protein (protein)

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3AGZ \| pdb_00003agz	Download File View File

Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70

Suzuki, H., Noguchi, S., Satow, Y.

(2010) Biochemistry 49: 8577-8584

Released	2011-02-23
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	DnaJ homolog subfamily B member 1 (protein) peptide of Heat shock cognate 71 kDa protein (protein)

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1CL6 | pdb_00001cl6

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE

1CMJ | pdb_00001cmj

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

1CMN | pdb_00001cmn

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

1F24 | pdb_00001f24

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ALA MUTANTS OF CYTOCHROME P450NOR

1F25 | pdb_00001f25

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ASN MUTANTS OF CYTOCHROME P450NOR

1F26 | pdb_00001f26

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243VAL MUTANTS OF CYTOCHROME P450NOR

1JFB | pdb_00001jfb

X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferric resting state at atomic resolution

1JFC | pdb_00001jfc

X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferrous CO state at atomic resolution

1TVO | pdb_00001tvo

The structure of ERK2 in complex with a small molecule inhibitor

3AGX | pdb_00003agx

Crystal structure of human Hsp40 Hdj1 peptide-binding domain

3AGY | pdb_00003agy

Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70

3AGZ | pdb_00003agz

Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CL6 | pdb_00001cl6

1CMJ | pdb_00001cmj

1CMN | pdb_00001cmn

1F24 | pdb_00001f24

1F25 | pdb_00001f25

1F26 | pdb_00001f26

1JFB | pdb_00001jfb

1JFC | pdb_00001jfc

1TVO | pdb_00001tvo

3AGX | pdb_00003agx

3AGY | pdb_00003agy

3AGZ | pdb_00003agz