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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (5)
	Ricinus communis (4)
	Discosoma sp. (3)
	Arabidopsis thaliana (2)
	Campylobacter jejuni (2)
	Camelidae (1)
	Campylobacter jejuni subsp. jejuni (1)
	Drosophila melanogaster (1)
	Glycine max (1)
	Simian virus 12 (1)

Taxonomy

	Eukaryota (11)
	Bacteria (3)
	Monodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (8)
	2.5 - 3.0 (1)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (10)
	2020 - 2024 (2)

Enzyme Classification Name

Transferases (4)

Symmetry Type

	Asymmetric (11)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	All alpha proteins (3)
	Artifacts (2)

AllSelected

1 to 14 of 14 Structures

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3S32 \| pdb_00003s32	Download File View File

Crystal structure of Ash2L N-terminal domain

Sarvan, S., Avdic, V., Tremblay, V., Chaturvedi, C.-P., Zhang, P., Lanouette, S., Blais, A., Brunzelle, J.S., Brand, M., Couture, J.-F.

(2011) Nat Struct Mol Biol 18: 857-859

Released	2011-06-08
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Set1/Ash2 histone methyltransferase complex subunit ASH2 (protein)
Unique Ligands	ZN

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4ETS \| pdb_00004ets	Download File View File

Crystal structure of Campylobacter jejuni ferric uptake regulator

Sarvan, S., Brunzelle, J.B., Couture, J.-F.

(2012) Proc Natl Acad Sci U S A 109: 10047-10052

Released	2012-06-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Campylobacter jejuni subsp. jejuni
Macromolecule	Ferric uptake regulation protein (protein)
Unique Ligands	CL, ZN

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5H87 \| pdb_00005h87	Download File View File

Crystal structure of mRojoA mutant - P63H - W143S

Pandelieva, A.T., Tremblay, V., Sarvan, S., Chica, R.A., Couture, J.-F.

(2016) ACS Chem Biol 11: 508-517

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Discosoma sp.
Macromolecule	mRojoA fluorescent protein (protein)

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5H88 \| pdb_00005h88	Download File View File

Crystal structure of mRojoA mutant - T16V -P63F - W143A - L163V

Pandelieva, A.T., Tremblay, V., Sarvan, S., Chica, R.A., Couture, J.-F.

(2016) ACS Chem Biol 11: 508-517

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Discosoma sp.
Macromolecule	mRojoA fluorescent protein (protein)

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5H89 \| pdb_00005h89	Download File View File

Crystal structure of mRojoA mutant - T16V - P63Y - W143G - L163V

Pandelieva, A.T., Tremblay, V., Sarvan, S., Chica, R.A., Couture, J.-F.

(2016) ACS Chem Biol 11: 508-517

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Discosoma sp.
Macromolecule	mRojoA fluorescent protein (protein)

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5VA6 \| pdb_00005va6	Download File View File

CRYSTAL STRUCTURE OF ATXR5 IN COMPLEX WITH HISTONE H3.1 MONO-METHYLATED ON R26

Bergamin, E., Sarvan, S., Malette, J., Eram, M., Yeung, S., Mongeon, V., Joshi, M., Brunzelle, J.S., Michaels, S.D., Blais, A., Vedadi, M., Couture, J.-F.

(2017) Nucleic Acids Res 45: 6375-6387

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Ricinus communis
Macromolecule	Histone H3.1 (protein) Probable Histone-lysine N-methyltransferase ATXR5 (protein)
Unique Ligands	SAH

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5VAB \| pdb_00005vab	Download File View File

Crystal structure of ATXR5 PHD domain in complex with histone H3

Bergamin, E., Sarvan, S., Malette, J., Eram, M., Yeung, S., Mongeon, V., Joshi, M., Brunzelle, J.S., Michaels, S.D., Blais, A., Vedadi, M., Couture, J.-F.

(2017) Nucleic Acids Res 45: 6375-6387

Released	2017-04-19
Method	X-RAY DIFFRACTION 1.702 Å
Organisms	Glycine max Homo sapiens
Macromolecule	ATXR5 PHD domain (protein) Histone H3 peptide (protein)
Unique Ligands	ZN

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5VAC \| pdb_00005vac	Download File View File

Crystal Structure of ATXR5 SET domain in complex with K36me3 histone H3 peptide

Bergamin, E., Sarvan, S., Malette, J., Eram, M., Yeung, S., Mongeon, V., Joshi, M., Brunzelle, J.S., Michaels, S.D., Blais, A., Vedadi, M., Couture, J.F.

(2017) Nucleic Acids Res 45: 6375-6387

Released	2017-04-19
Method	X-RAY DIFFRACTION 1.949 Å
Organisms	Homo sapiens Ricinus communis
Macromolecule	Histone H3.2 (protein) Probable Histone-lysine N-methyltransferase ATXR5 (protein)
Unique Ligands	DMS, SAH

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5VAH \| pdb_00005vah	Download File View File

Crystal structure of ATXR5 SET domain in complex with histone H3 di-methylated on R26

Bergamin, E., Sarvan, S., Malette, J., Eram, M., Yeung, S., Mongeon, V., Joshi, M., Brunzelle, J.S., Michaels, S.D., Blais, A., Vedadi, M., Couture, J.-F.

(2017) Nucleic Acids Res 45: 6375-6387

Released	2017-04-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana Ricinus communis
Macromolecule	Histone H3.2 (protein) Probable Histone-lysine N-methyltransferase ATXR5 (protein)
Unique Ligands	SAH

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5VBC \| pdb_00005vbc	Download File View File

Crystal structure of ATXR5 in complex with histone H3.1

Couture, J.-F., Bergamin, E.

(2017) Nucleic Acids Res 45: 6375-6387

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Arabidopsis thaliana Ricinus communis
Macromolecule	Histone H3.1 peptide (protein) Probable Histone-lysine N-methyltransferase ATXR5 (protein)
Unique Ligands	DMS, SAH

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6D57 \| pdb_00006d57	Download File View File

Campylobacter jejuni ferric uptake regulator S1 metalated

Sarvan, S., Brunzelle, J.S., Couture, J.F.

(2018) Sci Rep 8: 7140-7140

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Campylobacter jejuni
Macromolecule	Ferric uptake regulation protein (protein)
Unique Ligands	FMT, GOL, ZN

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6DK4 \| pdb_00006dk4	Download File View File

Crystal structure of Campylobacter jejuni peroxide stress regulator

Sarvan, S., Brunzelle, J.S., Couture, J.F.

(2018) FEBS Lett 592: 2351-2360

Released	2018-06-13
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Campylobacter jejuni
Macromolecule	Ferric uptake regulation protein (protein)
Unique Ligands	MN, MPD, ZN

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8SKJ \| pdb_00008skj	Download File View File

Crystal structure of a Nanobody bound to the V5 peptide.

Zaghal, M., Matte, K., Venes, A., Patel, S., Laroche, G., Sarvan, S., Joshi, M., Couture, J.F., Giguere, P.M.

(2023) J Biological Chem 299: 105107-105107

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Camelidae Simian virus 12
Macromolecule	NbA1 (protein) V5 Epitope Tag Peptide (protein)

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9C0O \| pdb_00009c0o	Download File View File

Crystal structure of DmCfp1 PHD finger bound to H3K4me3

Gregoire, S., Couture, J.F.

(2024) Structure 32: 1498

Released	2024-07-03
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Drosophila melanogaster Homo sapiens
Macromolecule	CXXC-type zinc finger protein 1 (protein) Histone H3.3C (protein)
Unique Ligands	DMS, SO4, ZN

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3S32 | pdb_00003s32

Crystal structure of Ash2L N-terminal domain

4ETS | pdb_00004ets

Crystal structure of Campylobacter jejuni ferric uptake regulator

5H87 | pdb_00005h87

Crystal structure of mRojoA mutant - P63H - W143S

5H88 | pdb_00005h88

Crystal structure of mRojoA mutant - T16V -P63F - W143A - L163V

5H89 | pdb_00005h89

Crystal structure of mRojoA mutant - T16V - P63Y - W143G - L163V

5VA6 | pdb_00005va6

CRYSTAL STRUCTURE OF ATXR5 IN COMPLEX WITH HISTONE H3.1 MONO-METHYLATED ON R26

5VAB | pdb_00005vab

Crystal structure of ATXR5 PHD domain in complex with histone H3

5VAC | pdb_00005vac

Crystal Structure of ATXR5 SET domain in complex with K36me3 histone H3 peptide

5VAH | pdb_00005vah

Crystal structure of ATXR5 SET domain in complex with histone H3 di-methylated on R26

5VBC | pdb_00005vbc

Crystal structure of ATXR5 in complex with histone H3.1

6D57 | pdb_00006d57

Campylobacter jejuni ferric uptake regulator S1 metalated

6DK4 | pdb_00006dk4

Crystal structure of Campylobacter jejuni peroxide stress regulator

8SKJ | pdb_00008skj

Crystal structure of a Nanobody bound to the V5 peptide.

9C0O | pdb_00009c0o

Crystal structure of DmCfp1 PHD finger bound to H3K4me3

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3S32 | pdb_00003s32

4ETS | pdb_00004ets

5H87 | pdb_00005h87

5H88 | pdb_00005h88

5H89 | pdb_00005h89

5VA6 | pdb_00005va6

5VAB | pdb_00005vab

5VAC | pdb_00005vac

5VAH | pdb_00005vah

5VBC | pdb_00005vbc

6D57 | pdb_00006d57

6DK4 | pdb_00006dk4

8SKJ | pdb_00008skj

9C0O | pdb_00009c0o